Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3003 ATGCTCATTCCGGCTGCCATCAACGCCCTCAAATCCTCAAGGTCCATATCTTGGTCACCGACGGGTAGGTTTCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCACTCGGGGAAGGTTTCGAGAGTGAGGTTATGTCCGGAATCTGCCGGCAGAGGGAGGTATTTCGATTTCAGGTCCAACTTCATTCCAGCTTCGATTGATTACGCCCAAGATTCGCCTCTTTGTACCACGCTCTCTAAGGATGGGCTTAAGGTTCGAACCGTCGAGCACTTGCTTTCCGCGCTGGAGGGTTTGGGGATTGACAATTGCAGGATTGAGATAGAAAATGCTGATGCTAACGATAATCAGGTCGAGGTTCCAATTTTTGATGGATCTGCGGGTAAATGGGTGGATGCAATAGAGAAGGTCGGTATCAAGTTGGCTGTAGACCAGTGTGGCGTCTGCTGTGAGAAAATGGCACCATATGTAAATGAACCTGTTCATGTGTGGAGGAATGACTGCTATCTTGTTGCTTTTCCAGCCTCAACAGTTCGTATTACTTATGGAATTGACTTCCCTCAGGTGCCTGGCATTGGCTGCCAATGGTTTTCTACTGCCCCTTTGGATGCCATGTTCTATGCCGAGGAAATAGCCCCATCAAGAACCTTTTGCATTTACGAGGAGGTTGGTTTAAATTTATTAGCTAATAATTTTGCTGTGAATCTCTTTGTTAAGGTATTGGTATAA 741 46.96 MLIPAAINALKSSRSISWSPTGRFQQTLAGCLELSGISLHSGKVSRVRLCPESAGRGRYFDFRSNFIPASIDYAQDSPLCTTLSKDGLKVRTVEHLLSALEGLGIDNCRIEIENADANDNQVEVPIFDGSAGKWVDAIEKVGIKLAVDQCGVCCEKMAPYVNEPVHVWRNDCYLVAFPASTVRITYGIDFPQVPGIGCQWFSTAPLDAMFYAEEIAPSRTFCIYEEVGLNLLANNFAVNLFVKVLV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41276866 41280224 - Sed0021590.1 Sed04g3003 711606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3003 246 SUPERFAMILY Ribosomal protein S5 domain 2-like 24 144 IPR020568 -
Sed04g3003 246 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 229 IPR020568 -
Sed04g3003 246 Gene3D lpxc deacetylase, domain 2 160 239 IPR011334 GO:0008759(InterPro)|GO:0009245(InterPro)
Sed04g3003 246 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 25 228 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
Sed04g3003 246 Gene3D lpxc deacetylase, domain 1 23 149 IPR015870 GO:0008759(InterPro)|GO:0009245(InterPro)
Sed04g3003 246 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 227 IPR004463 GO:0008759(InterPro)|GO:0009245(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3003 K02535 - csv:101205101 410.609