Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3020 ATGACGAACTCCAAGGGTTTGTTTCACAGTCTCATCCGATCTTTCAAACTCGGTTCATCCAGAGACGGGCAGGGCGAGGAGGATTTGGAGCAGATCGCCGCTAAGGAGCAGAAGCTTATCCCCTTCCAAACCTTGGTTGAAGCCACCAATAATTTTCATCAAGATTTTAAGCTCGGCGAAGGCGGCTTTGGTCCCGTTTATAAGGGGAAGTTGAAGGATGGAAGAGTTATTGCAGTTAAAAAGTTATCACAATATTCAAAGCAAGGGAGAAGAGAGTTTATGACTGAGGCCAAGTTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTCTACGCATGGCTTAGAGAAACTACTGGTTTACGAGTACGTCGCAAACGAGAGCCTTGACAAGCTTCTTTTTAGTTTCAAAGCAGAATCTAGCCAACGAGGAGAACTCAATTGGAAGAGGAGGTATGACATAATCCTTGGCATAGCACGAGGCTTGCAGTATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGATATTAAAGCTAGCAACATTTTGTTGGACGATAAATGGGTCCCTAAGATTGCTGATTTTGGCATGGCCCGTCTCTTCCCCGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCCGAATATGTAATGCATGGACATCTATCATCAAAGGCAGATGTTTTTAGCTTTGGCGTTTTGGTCCTGGAACTCATTAGTGGCCAGCGGAACTCATCGTTTAGTTCCTTTCTGGAAGCTGAAAATCTACTTGATTGGATTTACAAGCTATACAAGATGGGCAGGAGCTTGGAAATCTTGGACCCAACATTAGCATCCTCAGCTGTTCATGACCAAGTTTCAATGTGCATTCAGATAGGATTGCTCTGCACACAAAGCGATCCACAACTACGACCGACCATGCAACGCGTAGTTTTGATCCTTTCGAAGAGACCTGGTAATTTGGAGGAACCAACGAGACCAGGAATACCTGGTTCCCGATATCGAAGATCTCGTAGGACAAGTGTATCGTCCTCCAATGCTGGAACTTCTGGTGCATCTTATTCCTCTACTTCGACGACCAATACCATTACAGGAAATATAACTCCAACTGCAGCAGCATCTGCAAACAAGACTGAAATTGCTTCTGGTTCTTCTTCAGTTAGTCGAGGATACGATATGCGAGGGAAACGCCCCATGGAAGGCTAA 1242 44.61 MTNSKGLFHSLIRSFKLGSSRDGQGEEDLEQIAAKEQKLIPFQTLVEATNNFHQDFKLGEGGFGPVYKGKLKDGRVIAVKKLSQYSKQGRREFMTEAKLLARVQHRNVVNLLGYSTHGLEKLLVYEYVANESLDKLLFSFKAESSQRGELNWKRRYDIILGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSSKADVFSFGVLVLELISGQRNSSFSSFLEAENLLDWIYKLYKMGRSLEILDPTLASSAVHDQVSMCIQIGLLCTQSDPQLRPTMQRVVLILSKRPGNLEEPTRPGIPGSRYRRSRRTSVSSSNAGTSGASYSSTSTTNTITGNITPTAAASANKTEIASGSSSVSRGYDMRGKRPMEG 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41398717 41403103 + Sed0013185.1 Sed04g3020 711623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3020 413 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Sed04g3020 413 CDD STKc_IRAK 58 328 - -
Sed04g3020 413 ProSiteProfiles Protein kinase domain profile. 52 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3020 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3020 413 MobiDBLite consensus disorder prediction 348 401 - -
Sed04g3020 413 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 363 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Sed04g3020 413 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Sed04g3020 413 Pfam Protein kinase domain 53 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3020 413 MobiDBLite consensus disorder prediction 331 413 - -
Sed04g3020 413 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Sed04g3020 413 FunFam Cysteine-rich receptor-like protein kinase 2 128 334 - -
Sed04g3020 413 SMART serkin_6 52 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3020 413 SUPERFAMILY Protein kinase-like (PK-like) 38 344 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3020 Sed-Chr4:41398717 Sed04g3022 Sed-Chr4:41398717 1.30E-212 dispersed
Sed04g3020 Sed-Chr4:41398717 Sed04g3021 Sed-Chr4:41398717 6.70E-212 tandem
Sed04g3020 Sed-Chr4:41398717 Sed06g0176 Sed-Chr6:1227379 9.40E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79064 PF00069 Pkinase 3.20E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3020 - - - 0.0