Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3021 ATGACGAACTCCAAGGGTTTGTTTCACAGTCTCATCCGATCTTTCAAACTCGGTTCATCCAGAGACGGGCAGGGCGAGGAGGATTTGGAGCAGATCGCCGCTAAGGAGCAGAAGCTTATCCCCTTCCAAACCTTGGTTGAAGCCACCAATAATTTTCATCAAGATTTTAAGCTCGGCGAAGGCGGCTTTGGTCCCGTTTATAAGGGGAAGTTGAAGGATGGAAGAGTTATTGCAGTTAAAAAGTTATCACAATATTCAAAGCAAGGGAGAAGAGAGTTTATGACTGAGGCCAAGTTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTCTACGCATGGCTTAGAGAAACTACTGGTTTACGAGTACGTCGCAAACGAGAGCCTTGACAAGCTTCTTTTTAAATCTAGCCAACGAGGAGAACTCAATTGGAAGAGGAGGTATGACATAATCCTTGGCATAGCACGAGGCTTGCAGTATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGATATTAAAGCTAGCAACATTTTGTTGGACGATAAATGGGTCCCTAAGATTGCTGATTTTGGCATGGCCCGTCTCTTCCCCGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCCGAATATGTAATGCATGGACATCTATCATCAAAGGCAGATGTTTTTAGCTTTGGCGTTTTGGTCCTGGAACTCATTAGTGGCCAGCGGAACTCATCGTTTAGTTCCTTTCTGGAAGCTGAAAATCTACTTGATTGGATTTACAAGCTATACAAGATGGGCAGGAGCTTGGAAATCTTGGACCCAACATTAGCATCCTCAGCTGTTCATGACCAAGTTTCAATGTGCATTCAGATAGGATTGCTCTGCACACAAAGCGATCCACAACTACGACCGACCATGCAACGCGTAGTTTTGATCCTTTCGAAGAGACCTGGTAATTTGGAGGAACCAACGAGACCAGGAATACCTGGTTCCCGATATCGAAGATCTCGTAGGACAAGTGTATCGTCCTCCAATGCTGGAACTTCTGGTGCATCTTATTCCTCTACTTCGACGACCAATACCATTACAGGAAATATAACTCCAACTGCAGCAGCATCTGCAAACAAGACTGAAATTGCTTCTGGTTCTTCTTCAGTTAGTCGAGGATACGATATGCGAGGGAAACGCCCCATGGAAGGCTAA 1230 44.63 MTNSKGLFHSLIRSFKLGSSRDGQGEEDLEQIAAKEQKLIPFQTLVEATNNFHQDFKLGEGGFGPVYKGKLKDGRVIAVKKLSQYSKQGRREFMTEAKLLARVQHRNVVNLLGYSTHGLEKLLVYEYVANESLDKLLFKSSQRGELNWKRRYDIILGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSSKADVFSFGVLVLELISGQRNSSFSSFLEAENLLDWIYKLYKMGRSLEILDPTLASSAVHDQVSMCIQIGLLCTQSDPQLRPTMQRVVLILSKRPGNLEEPTRPGIPGSRYRRSRRTSVSSSNAGTSGASYSSTSTTNTITGNITPTAAASANKTEIASGSSSVSRGYDMRGKRPMEG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41398717 41403103 + Sed0013185.2 Sed04g3021 711624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3021 409 ProSiteProfiles Protein kinase domain profile. 52 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3021 409 MobiDBLite consensus disorder prediction 344 397 - -
Sed04g3021 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3021 409 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Sed04g3021 409 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
Sed04g3021 409 MobiDBLite consensus disorder prediction 327 409 - -
Sed04g3021 409 Gene3D Transferase(Phosphotransferase) domain 1 128 331 - -
Sed04g3021 409 SUPERFAMILY Protein kinase-like (PK-like) 38 340 IPR011009 -
Sed04g3021 409 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 359 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Sed04g3021 409 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3021 409 CDD STKc_IRAK 58 324 - -
Sed04g3021 409 SMART serkin_6 52 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3021 409 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3021 Sed-Chr4:41398717 Sed06g0176 Sed-Chr6:1227379 5.80E-176 dispersed
Sed04g3020 Sed-Chr4:41398717 Sed04g3021 Sed-Chr4:41398717 6.70E-212 tandem
Sed04g3021 Sed-Chr4:41398717 Sed04g3022 Sed-Chr4:41398717 3.00E-212 tandem
Sed04g0286 Sed-Chr4:2135115 Sed04g3021 Sed-Chr4:41398717 6.80E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79065 PF00069 Pkinase 6.60E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3021 - - - 0.0