Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3022 ATGACGAACTCCAAGGGTTTGTTTCACAGTCTCATCCGATCTTTCAAACTCGGTTCATCCAGAGACGGGCAGGGCGAGGAGGATTTGGAGCAGATCGCCGCTAAGGAGCAGAAGCTTATCCCCTTCCAAACCTTGGTTGAAGCCACCAATAATTTTCATCAAGATTTTAAGCTCGGCGAAGGCGGCTTTGGTCCCGTTTATAAGGGGAAGTTGAAGGATGGAAGAGTTATTGCAGTTAAAAAGTTATCACAATATTCAAAGCAAGGGAGAAGAGAGTTTATGACTGAGGCCAAGTTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTCTACGCATGGCTTAGAGAAACTACTGGTTTACGAGTACGTCGCAAACGAGAGCCTTGACAAGCTTCTTTTTACAGAATCTAGCCAACGAGGAGAACTCAATTGGAAGAGGAGGTATGACATAATCCTTGGCATAGCACGAGGCTTGCAGTATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGATATTAAAGCTAGCAACATTTTGTTGGACGATAAATGGGTCCCTAAGATTGCTGATTTTGGCATGGCCCGTCTCTTCCCCGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCCGAATATGTAATGCATGGACATCTATCATCAAAGGCAGATGTTTTTAGCTTTGGCGTTTTGGTCCTGGAACTCATTAGTGGCCAGCGGAACTCATCGTTTAGTTCCTTTCTGGAAGCTGAAAATCTACTTGATTGGATTTACAAGCTATACAAGATGGGCAGGAGCTTGGAAATCTTGGACCCAACATTAGCATCCTCAGCTGTTCATGACCAAGTTTCAATGTGCATTCAGATAGGATTGCTCTGCACACAAAGCGATCCACAACTACGACCGACCATGCAACGCGTAGTTTTGATCCTTTCGAAGAGACCTGGTAATTTGGAGGAACCAACGAGACCAGGAATACCTGGTTCCCGATATCGAAGATCTCGTAGGACAAGTGTATCGTCCTCCAATGCTGGAACTTCTGGTGCATCTTATTCCTCTACTTCGACGACCAATACCATTACAGGAAATATAACTCCAACTGCAGCAGCATCTGCAAACAAGACTGAAATTGCTTCTGGTTCTTCTTCAGTTAGTCGAGGATACGATATGCGAGGGAAACGCCCCATGGAAGGCTAA 1233 44.69 MTNSKGLFHSLIRSFKLGSSRDGQGEEDLEQIAAKEQKLIPFQTLVEATNNFHQDFKLGEGGFGPVYKGKLKDGRVIAVKKLSQYSKQGRREFMTEAKLLARVQHRNVVNLLGYSTHGLEKLLVYEYVANESLDKLLFTESSQRGELNWKRRYDIILGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSSKADVFSFGVLVLELISGQRNSSFSSFLEAENLLDWIYKLYKMGRSLEILDPTLASSAVHDQVSMCIQIGLLCTQSDPQLRPTMQRVVLILSKRPGNLEEPTRPGIPGSRYRRSRRTSVSSSNAGTSGASYSSTSTTNTITGNITPTAAASANKTEIASGSSSVSRGYDMRGKRPMEG 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41398717 41403103 + Sed0013185.3 Sed04g3022 711625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3022 410 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Sed04g3022 410 MobiDBLite consensus disorder prediction 345 398 - -
Sed04g3022 410 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Sed04g3022 410 ProSiteProfiles Protein kinase domain profile. 52 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3022 410 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 360 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Sed04g3022 410 CDD STKc_IRAK 58 325 - -
Sed04g3022 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3022 410 SMART serkin_6 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3022 410 MobiDBLite consensus disorder prediction 328 410 - -
Sed04g3022 410 FunFam Cysteine-rich receptor-like protein kinase 2 128 331 - -
Sed04g3022 410 Gene3D Phosphorylase Kinase; domain 1 17 127 - -
Sed04g3022 410 Pfam Protein kinase domain 53 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3022 410 SUPERFAMILY Protein kinase-like (PK-like) 38 341 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3020 Sed-Chr4:41398717 Sed04g3022 Sed-Chr4:41398717 1.30E-212 dispersed
Sed04g3022 Sed-Chr4:41398717 Sed06g0176 Sed-Chr6:1227379 4.20E-174 dispersed
Sed04g3021 Sed-Chr4:41398717 Sed04g3022 Sed-Chr4:41398717 3.00E-212 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79066 PF00069 Pkinase 9.10E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3022 - - - 0.0