Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3031 ATGAAGAACAATGGAACAGGACTTGTTCGAATTCGGCTGCTGCGAGGCAACAATCTCGCCATCCGCGATGCTCCTTCTCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAACCAGAAATTCAAATCTCGCGTGGTGAAAAGAAACTGCAATCCACAGTGGAACGAGGAATTCACACTTCCCATTGCCGATATCAACACACCAATCAAATTAAAAGTGTTTGACAAAGATCGGTTCACAAAAGACGACGAAATGGGGGACGCAGAGATCGACCTAAAACCATACCTAGAGTGTTTGGATATGGGATTAGGGGATCTCCCAAATGGTTGTGTGGTGAAAAGGGTTCAACCAAGTAGATCAAACAGTCTTTCAGAGGAGAGTCCTTGTGTTTGGAACGATGGTAAGATCATTCAAGACATGACTCTCAGGCTGCAGAATGTTGAATGTGGTGAAATTATGATTCAGCTTCAGTTGTTCAATGCTTCCGGGGTTAAAGGCATGAGAACCTACTCTTTAGCCTGA 525 45.52 MKNNGTGLVRIRLLRGNNLAIRDAPSRSSDPYVVISTANQKFKSRVVKRNCNPQWNEEFTLPIADINTPIKLKVFDKDRFTKDDEMGDAEIDLKPYLECLDMGLGDLPNGCVVKRVQPSRSNSLSEESPCVWNDGKIIQDMTLRLQNVECGEIMIQLQLFNASGVKGMRTYSLA 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41441341 41444620 - Sed0003965.1 Sed04g3031 711634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3031 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 94 IPR035892 -
Sed04g3031 174 SMART C2_3c 8 105 IPR000008 -
Sed04g3031 174 Gene3D C2 domain 1 169 IPR035892 -
Sed04g3031 174 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Sed04g3031 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 166 IPR044562 -
Sed04g3031 174 Pfam C2 domain 8 95 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3031 Sed-Chr4:41441341 Sed11g1445 Sed-Chr11:30266181 1.60E-53 dispersed
Sed04g3031 Sed-Chr4:41441341 Sed06g0179 Sed-Chr6:1242089 2.20E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3031 - - - 0.0