Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3043 ATGGCCGGAATTGTCGCCGTCGACTGCGACAGTCCACCGGCGGTGGCTCTACTTGACTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACGAACAATGGAGAGGTTTTCAAGAAAGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTTAATGGCGTCCAACTTCGACCTGTTGATGCATCTTGCTCTTCTTCTTCTTCTGTTACTGGTAGGGATTCGTCTACGAGTCCATGGCTGTGTGATTTAGTGGCGGCATTGAAGGATGTTAAGCGCCTCGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGCTCTTCCGAAGAAGCTGCCAAGAAGATACTCTTCCAATTCCAATGTGTGACGTCGAAGTTAGAGAAGGCATTGGGAAATATTCCTTATGATCGCGGCTTTGAGATATCAGAGGAAGTTCAAGAGCAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGATTGCAATTCCGCCTGTTGCTCAATCTCAGTTGCTAGAGCAAAACATGGTTCTGTTGAATCTGAACAACTCGGCTGACAACTTTGATGTTGAGGAGAATGGTGATGTTGATCATGAAATTACAGTGAAATTTGATGCTTTTCCAAATTGTAGAGGCTTGATGAATAATTGTGTGGATCAGCTGATTTTCAAAGGACTTGAGAAGAATCTTCCATCCTCCTCAGAGGCTTGTGCTGATGAACAGGATGAATCTACCAAAAACAGTGGAGACCAGGTGAAGAGCTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTAGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACATACGAGAGATCTTATGTTCAAAGGTGGATAGACTCTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAACTTGACTCTCACCCCAAATTATGTACTGCGAAGCCTTATTAGTCACTGGTGTGCCAATCACAATATTGAGCAACCAACAGGATTAACCAATGGAAAGATCAAAAAGTGCGACGGATCGTATCGTGACGTGTGTGAGGAGATGGAAGCCATTAAAACTCTGGTCAGCAAGCTCACTAGCCATTCGATCGAGGAGCGGAGGGATTCCGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACAGACAATAGAATACTAATAGCTGAAGCAGGAGCAATTCCACATTTGGTCAATTTGTTAACTGCTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCGATATACGAAAACAACAAGGGGCTAATTATGCTTGCTGGGGCAATACCTTCCATTGTACAAGTTCTTAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCTACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATAATTGGAGCTTCTGGGGCCATTCCGGCTCTTGTGGATTTACTCGAAAATGGAAGCGCAAGAGGGAAGAAAGATGCTGCAACAGCACTATTTAATCTGTGTATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGTCAGGGATCATTGCAGCTCTATTAAAGATGCTTACCGACTCAGTTAACTCCATGGTCGACGAAGCTCTCACGATAATATCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAGGCCAGTACCATACCTGTTCTAATAGACCTGCTGAGGACCGAATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTCTGTGTAAGCGAGATACTGACAATCTTTCTTGCATAAGTAGGCTCGGTGCTGTGATTCCGCTGACTGAGCTCGCCAAGAGCGGCACGGAGAGAGCAAAAAGGAAGGCTACTTCACTGTTGGAGCATCTTCGAAAACTGCAGTAG 1956 45.04 MAGIVAVDCDSPPAVALLDFVRDVVRMSAGTNNGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQLRPVDASCSSSSSVTGRDSSTSPWLCDLVAALKDVKRLVFIASTFRSCSSSEEAAKKILFQFQCVTSKLEKALGNIPYDRGFEISEEVQEQVELVRAQLRRAAEKYGSLIAIPPVAQSQLLEQNMVLLNLNNSADNFDVEENGDVDHEITVKFDAFPNCRGLMNNCVDQLIFKGLEKNLPSSSEACADEQDESTKNSGDQVKSSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDSGNTTCPKTQQKLQNLTLTPNYVLRSLISHWCANHNIEQPTGLTNGKIKKCDGSYRDVCEEMEAIKTLVSKLTSHSIEERRDSVTELRSLSKRSTDNRILIAEAGAIPHLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSARGKKDAATALFNLCIYQGNKGRAVRSGIIAALLKMLTDSVNSMVDEALTIISVLASHQEAKVAMVKASTIPVLIDLLRTELPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQ 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41531483 41535735 - Sed0005333.1 Sed04g3043 711646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3043 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 Gene3D - 552 651 IPR011989 -
Sed04g3043 651 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g3043 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 538 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 FunFam RING-type E3 ubiquitin transferase 271 347 - -
Sed04g3043 651 FunFam RING-type E3 ubiquitin transferase 357 450 - -
Sed04g3043 651 FunFam RING-type E3 ubiquitin transferase 451 551 - -
Sed04g3043 651 Gene3D - 356 454 IPR011989 -
Sed04g3043 651 Coils Coil 150 170 - -
Sed04g3043 651 Gene3D - 455 551 IPR011989 -
Sed04g3043 651 SMART arm_5 444 484 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 SMART arm_5 567 607 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 SMART arm_5 609 649 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 SMART arm_5 403 443 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 SMART arm_5 526 566 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 SMART arm_5 485 525 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 FunFam RING-type E3 ubiquitin transferase 553 651 - -
Sed04g3043 651 Pfam U-box domain 274 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g3043 651 SUPERFAMILY ARM repeat 362 647 IPR016024 -
Sed04g3043 651 SUPERFAMILY RING/U-box 268 347 - -
Sed04g3043 651 MobiDBLite consensus disorder prediction 248 272 - -
Sed04g3043 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 SMART Ubox_2 277 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g3043 651 CDD RING-Ubox_PUB 275 327 IPR045210 -
Sed04g3043 651 Pfam Armadillo/beta-catenin-like repeat 403 442 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 Pfam Armadillo/beta-catenin-like repeat 486 524 IPR000225 GO:0005515(InterPro)
Sed04g3043 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Sed04g3043 651 PANTHER U BOX DOMAIN-CONTAINING 36 649 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1130 Sed-Chr3:7029722 Sed04g3043 Sed-Chr4:41531483 4.60E-87 dispersed
Sed04g3043 Sed-Chr4:41531483 Sed11g1664 Sed-Chr11:31926072 2.30E-73 dispersed
Sed04g3043 Sed-Chr4:41531483 Sed06g0188 Sed-Chr6:1341406 1.50E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3043 - - - 0.0