Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3060 ATGGTGTTTTCTGCGATGAAACTTGTGGTTTTGAGGTGCTCTTTGTTTTTCTCTGTCTTGTTGTTTTGTGTACTGCCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTAGCATTGAAAGAATCTCTTGACCTTGGAAACTCGCTTCCATGGCGAGGAGACTCCGTCTGCAGCTGGAAGGGCGTAAAAGAGTGCTCAAATGGACGGGTAACTAAGCTCGTTTTGGAGCGCCTGAATCTCTCTGGTGTTGTGAACCACGGGATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTGAAAGGAAATTTACTTTCCGGCCAAATCCCTGACCTCTCTGGCCTCCTTAACCTCAAATCACTCTATCTAAGCGATAACAAATTTTCCGGCGAGTTTCCGACCTCCATCTCCGATCTCCACCGATTGAAGGTCATCGTCCTTTCCGGTAACCAAATATCTGGCCCCATTCCAGATTCGCTGCTGAAACTCCGGCGTCTCTACGTTCTGCACCTTCAGGACAACCAATTCAGCGGCTCAATCCCTCCTTTCAACCAAACCAGTCTCCGATTCTTCAATGTCTCTAACAACCGCCTCTCCGGCGACATCCCAGTAACCCCCGCCTTGGTCCGCTTCAATGTGTCGTCATTTTCCGGTAACCTGGAACTTTGCGGAGAACAAATTCAGAACCCCTGTGGAAATGCTGCCGATGCACCATCAACCAGTCCCCCTCATCCACAAAGCCCATCAAGACGCAGAAAATTGGTCAAGATAATTGCAGGAAGCGTTAGTGGGTTCATCGGAGTTATATTAATCATTCTTCTACTGTGTATGGTTTGCAAGTGTAGGGAAAGAAAGAGCCTAGCGGAGGTTAGAAACAAAGGGACCGGCGACGAGGGGATGGGGATGGAGGAAACGTCTGGAACCGCCGCCGCCGCCGGCGGAGGAGGAGGTAATAACGGAGGAAAGCAAGGGGGGTTTTCATGGGAAAGTGAAGGACTAGGGAGTTTAGTGTTCTGCGGTGCAGGGGATCAGAAAATGACATATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTCTGGGCAGAGGAACCATCGGAAGCACATACAAGGCAGTGATGGAGTCCGGGTACATTGTTACGGTGAAACGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTTGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAATTTGGTCCCTCTAAGGGCATATTTCCAGGCTAAGGAGGAACGCTTGCTCGTATACGATTACTTCCCCAATGGTAGCCTCTTCTCTCTCATCCACGGATCAAGAACTTCAGGTGGAGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATAGCTGAAGACTTGGCCAATGGTTTGTTGTACATTCACCAGAACCCTGGCTTAACTCATGGAAACCTGAAATCCTCCAATGTACTACTAGGATCTGATTTCGAGTCTTGTATTACTGATTATGGTCTTAACTTATTCCGGGATCCGGATTCACTCGAAGAACCTAGTGCAACTTCACTCTTCTACCGAGCTCCCGAATGCCGGGACATCCGTAAGCCAACCACACAGCAAGCCGACATCTATAGCTTTGGTGTTCTTGTGTTGGAGCTTCTGACTGGTAAAACACCATTTCAAGATCTTGTCCAAGAACATGGCGCTGACATTCCCAAGTGGGTTAATTCAGTTAGAGAAGAGGAAACCGAGTCCGGGGACGACCCCGCATCCGGGAACGAGGCATCGGAAGAGAAACTTCAAGCCCTTTTGAACATTGCAATGGCTTGTGTTTCGCTTTCGCCACAGAATCGACCTACCATGAGGGAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGTCCAAATCTCATCCAATAGTAGTGACCATTCACCAGGGAGCTGGTCAGATATTGTCCAGAGTTTACCCAGGCAAGAACATTTAAGCATTTGA 1983 48.76 MVFSAMKLVVLRCSLFFSVLLFCVLPLVRAGDAEALLALKESLDLGNSLPWRGDSVCSWKGVKECSNGRVTKLVLERLNLSGVVNHGILNRLDQLRVLSLKGNLLSGQIPDLSGLLNLKSLYLSDNKFSGEFPTSISDLHRLKVIVLSGNQISGPIPDSLLKLRRLYVLHLQDNQFSGSIPPFNQTSLRFFNVSNNRLSGDIPVTPALVRFNVSSFSGNLELCGEQIQNPCGNAADAPSTSPPHPQSPSRRRKLVKIIAGSVSGFIGVILIILLLCMVCKCRERKSLAEVRNKGTGDEGMGMEETSGTAAAAGGGGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCITDYGLNLFRDPDSLEEPSATSLFYRAPECRDIRKPTTQQADIYSFGVLVLELLTGKTPFQDLVQEHGADIPKWVNSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLSPQNRPTMREVLKMIRDTRAEVQISSNSSDHSPGSWSDIVQSLPRQEHLSI 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41636621 41643420 - Sed0022758.2 Sed04g3060 711663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3060 660 MobiDBLite consensus disorder prediction 631 660 - -
Sed04g3060 660 FunFam Nuclear pore complex protein NUP107 29 182 - -
Sed04g3060 660 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515(InterPro)
Sed04g3060 660 ProSiteProfiles Protein kinase domain profile. 355 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3060 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 632 IPR046959 -
Sed04g3060 660 Gene3D Phosphorylase Kinase; domain 1 338 430 - -
Sed04g3060 660 Pfam Leucine Rich Repeat 187 204 IPR001611 GO:0005515(InterPro)
Sed04g3060 660 Gene3D Ribonuclease Inhibitor 185 234 IPR032675 -
Sed04g3060 660 MobiDBLite consensus disorder prediction 570 591 - -
Sed04g3060 660 Pfam Leucine rich repeat N-terminal domain 31 62 IPR013210 -
Sed04g3060 660 SUPERFAMILY Protein kinase-like (PK-like) 359 634 IPR011009 -
Sed04g3060 660 Pfam Protein kinase domain 358 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3060 660 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Sed04g3060 660 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Sed04g3060 660 SUPERFAMILY L domain-like 38 223 - -
Sed04g3060 660 Gene3D Transferase(Phosphotransferase) domain 1 431 645 - -
Sed04g3060 660 MobiDBLite consensus disorder prediction 231 252 - -
Sed04g3060 660 MobiDBLite consensus disorder prediction 292 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2432 Sed-Chr1:18128318 Sed04g3060 Sed-Chr4:41636621 3.10E-110 dispersed
Sed04g3060 Sed-Chr4:41636621 Sed06g0222 Sed-Chr6:1658158 2.00E-279 dispersed
Sed04g3059 Sed-Chr4:41636621 Sed04g3060 Sed-Chr4:41636621 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79068 PF00069 Pkinase 1.30E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3060 - - - 0.0