Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3062 ATGGCTTCCTCATCTTCACTCCCCTCCAAAACCAGAACCCTAATCGACATCTTCCACCCAGTCCTCTCCAAACGCGCAAAAACCTCGCACACATTGAAAACCCTCTCCACCACGGACCACAAATGCGATCCAGAGCTCGCATCACCTTCCCCTTCGATCGATATCTCCGCCGCCGAGAAATCTCGCATGGAAACCAACAAATGGCTGGCCAGATCGAAGCGGAATCTCAAAATCTGCTCGGATAGGGTTTCCAAATGGGAGAACGGATGCGTGAAATTGGCGGAGCTTTTGGTGGAGGAGACATGGTTCGAAGCCCTTCCCGGAGAGTTTGAGAAGCCCTATGTCGTTAATCTCTGTAAATTTGTAGAATCGGAGATTTGTAGCAGTGGGGTTTCTGTTTATCCTCCTCCGTGTTTGATCTTTAATGCTCTGAATTCTACCCCTTTTGAGAGGGTGAAAGTTGTTATTCTTGGTCAAGATCCTTATCACGGGCCTGGTCAAGCTATGGGGCTTTCGTTTTCTGTTCCTGAGGGAGTTAAGATCCCGTCTAGCCTTGTCAACATATTCAAGGAACTGAGGGATGATCTTGGTTGTTCTATTCCATCCCATGGAAATCTAGAGAAATGGGCTGTTCAGGGAGTCTTGTTGCTCAATGCAGTTCTCACAGTTAGAAAGCATCAAGCCAACTCTCATGCTAAGAAAGGATGGGAACAATTCACCGATGCTGTCATCAAGACAATATCTCAAAAGAAGGAAGGGGTTGTTTTTCTTCTCTGGGGGAACTCTGCTCAAGCGAAGCTGAGGTTAATAGATGAGAAAAAACATCACATTCTCAAAGCAGCGCATCCTTCTGGTTTGTCTGCTAACAGAGGCTTCTTTGGCTGCAGGCATTTTTCTCAAACAAACATGCTTCTCAAGGAACTAGGCTCTGCCTCTATAGACTGGAAACTTTGA 954 46.54 MASSSSLPSKTRTLIDIFHPVLSKRAKTSHTLKTLSTTDHKCDPELASPSPSIDISAAEKSRMETNKWLARSKRNLKICSDRVSKWENGCVKLAELLVEETWFEALPGEFEKPYVVNLCKFVESEICSSGVSVYPPPCLIFNALNSTPFERVKVVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLVNIFKELRDDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDAVIKTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSQTNMLLKELGSASIDWKL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41662658 41666379 - Sed0002621.1 Sed04g3062 711665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3062 317 ProSitePatterns Uracil-DNA glycosylase signature. 153 162 IPR018085 GO:0006281(InterPro)|GO:0016799(InterPro)
Sed04g3062 317 CDD UDG-F1-like 114 315 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Sed04g3062 317 Hamap Uracil-DNA glycosylase [ung]. 99 316 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Sed04g3062 317 PANTHER URACIL-DNA GLYCOSYLASE 36 317 IPR002043 GO:0004844(PANTHER)|GO:0004844(InterPro)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006281(InterPro)|GO:0006284(InterPro)|GO:0097510(PANTHER)
Sed04g3062 317 NCBIfam uracil-DNA glycosylase 100 307 IPR002043 GO:0004844(InterPro)|GO:0006281(InterPro)|GO:0006284(InterPro)
Sed04g3062 317 Gene3D - 79 317 IPR036895 -
Sed04g3062 317 Pfam Uracil DNA glycosylase superfamily 151 305 IPR005122 -
Sed04g3062 317 SMART UDG_2 145 305 IPR005122 -
Sed04g3062 317 SMART UDG_2_a 145 305 - -
Sed04g3062 317 FunFam Uracil-DNA glycosylase 92 317 - -
Sed04g3062 317 SUPERFAMILY Uracil-DNA glycosylase-like 97 316 IPR036895 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3062 K03648 - - csv:101207581 558.525
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1042 . . . . . . . . . . . . . . Sed04g3062 . . Bhi07g00120 Tan04g1675 Cmetu10g0133 Lac13g1644 Hepe01g0395 . . . . . . . . . . . . . . . Chy10g00117 Cme10g01102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01019 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011117 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 31