Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3065 ATGGCTGAGTCGGCGGGCAGGAAGAGGAGGAGGTCGGGCGGAGAAAAGGTGTTTAGGTTTAAGAGCTTTGGGGAGGATGGTCATCCTGCCGTGTTTGTCGGGCGGTTTCGGGACAATGTGGTGGCGCTGCTTGGGTTTGGACGGTTGGAGAGCGGAGAGTCGTGTGATGGAGGGTTGCGATGCTGGTCGTTTAGGCTGCAGGTTCAGCGGCAACCGCCTTTCCATGTCTTGCTGTTTGTCGTGGAGGAGCCGGTCGAGGCAGCGACCATGGCGGCGAGGCATTGTAAACCATGCCAGTATGTTGGATGGGGAGCACACATGATATGCAATAAAAAGTACCACTTTGTGGTGCCATCAAAGGAGACAATGAAAGCTGCTTCACAAAACAGCTGCAAAAGCATGTTGAGTTTGAGGCTGATGGAATTACAAGGCCACATCCTTCATGGGGTTTTCCACTCCAATGGCTTTGGTCATTTGCTTTGTATCAATGGACTAGAAATGGGCAACTCTTTGCCCGGTTACCTTCTCATGGACTTTTGGGATCGCTTGTGCAATGCACTCAAAGCAAGGTATGTGAGTTTGAGGGACGTTTCACAAAAGAAAGGCATGGAACTAAAGCTACTCCACAGCATCGCATATGGTGAACCGTGGTTCGGCAAATGGGGCTACAAAGTTAGCCGAGGAGCCTTCAAAGTTAGCACCCAAATGCACCAAAAAGCCATTGAAGCCCTTCAAAATCTCCATCTCTCAGTCCTTGTACACAACCTCGCAACAGCCAATCCCCACATCCCCTTCATTTTCTCTAAGTACCAATCCCTCTCCAACAATCCTCTTCTCACCCTCCAACAGCTCCTCCATTTCATGCTCAACCTCAAATCCCCCCTCCACATACATAACTCCATCGAACACTCGCATAACTTGCCCGGATTCTTGATCGAATCCACTTGTCGATGGTCCCCAAAGAGGGTCCAAATGGCTGTTCGAGTCATTGTCGAGGCGTTGAAGCGAGCTGAGTTTCGATGGATTTCACGGCAAGAGGTTCGGGATGCTGCCCGTATATATATTGGCGATACTGGGTTGTTGGATTTTGTGTTGAAGTCGTTGGGAAACCATGTTGTGGGAAATTATTTGGTTCGAAGAACGTTGAATCCTGTAACCAAAGTGCTTGAATATTGCTTGCAAGATGTTTGCAGTAGTACTGTTCAAATGAAACCCAGGTGTAAAGTTGGGAGAGCCGAGTTGGCAAAAGATATATTCAGCCTCTACAAATACATTCTTGGAAACCAAAAGGCAATGCAGGCAAAAGGAATTCTTCCCAATCTAACAATGGCTTCTGAAATCATCCTCGACTCGAAGTTCCTGGTCAAGGAGTACAACGCCGAGCCACAGGAAAAACCCGAGCTCGAAACTGAAGGAAAATTAAACTTGTTATGCACAGTTAGATTCAAAAGACAAGAAGCAATAACACTACTCCCATATGAGTGCATTTCATTGAAGAACAATGGCACCATTGATGAGTTGAAGGAGGAAGTGGAAAGGAACTTCAAGGAAATCTATTGGGGAATGAGGAGCTTTGCAGTTGAAAGAATTGTGGATTTGGAAGAGGCAAAAGGGAAGGATTTGGTGTTTGGAATGGTGGAAGTTGGTGGGAAGTTGGTATTTGAATTAGGAAATGGAGAATTAGATGGAGAAAGCTTTTTGTTCAACAATGGTGGAATGGAGAAGAGAATTATGGATTGTGTTTGTGGAGCTGTGGAAGATGATGGGGAGAGGATGCTGGCTTGTGATATTTGTGAAATTTGGCAACACACAAGGTGTGTTCAAATACCAAATGACCAACAAGTTCCTAATATTTTTATTTGTAATAGGTGTGACCAAGAAATCGCATTGTTGCGCTCATTGCCATAG 1908 46.07 MAESAGRKRRRSGGEKVFRFKSFGEDGHPAVFVGRFRDNVVALLGFGRLESGESCDGGLRCWSFRLQVQRQPPFHVLLFVVEEPVEAATMAARHCKPCQYVGWGAHMICNKKYHFVVPSKETMKAASQNSCKSMLSLRLMELQGHILHGVFHSNGFGHLLCINGLEMGNSLPGYLLMDFWDRLCNALKARYVSLRDVSQKKGMELKLLHSIAYGEPWFGKWGYKVSRGAFKVSTQMHQKAIEALQNLHLSVLVHNLATANPHIPFIFSKYQSLSNNPLLTLQQLLHFMLNLKSPLHIHNSIEHSHNLPGFLIESTCRWSPKRVQMAVRVIVEALKRAEFRWISRQEVRDAARIYIGDTGLLDFVLKSLGNHVVGNYLVRRTLNPVTKVLEYCLQDVCSSTVQMKPRCKVGRAELAKDIFSLYKYILGNQKAMQAKGILPNLTMASEIILDSKFLVKEYNAEPQEKPELETEGKLNLLCTVRFKRQEAITLLPYECISLKNNGTIDELKEEVERNFKEIYWGMRSFAVERIVDLEEAKGKDLVFGMVEVGGKLVFELGNGELDGESFLFNNGGMEKRIMDCVCGAVEDDGERMLACDICEIWQHTRCVQIPNDQQVPNIFICNRCDQEIALLRSLP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41679001 41684387 + Sed0019363.1 Sed04g3065 711668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3065 635 ProSiteProfiles Zinc finger PHD-type profile. 577 627 IPR019787 -
Sed04g3065 635 ProSitePatterns Zinc finger PHD-type signature. 580 624 IPR019786 -
Sed04g3065 635 CDD PHD_MMD1_like 579 624 - -
Sed04g3065 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Sed04g3065 635 Pfam PHD-finger 580 624 IPR019787 -
Sed04g3065 635 SMART PHD_3 579 625 IPR001965 -
Sed04g3065 635 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 7 628 - -
Sed04g3065 635 SUPERFAMILY FYVE/PHD zinc finger 573 628 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3065 K26271 - - csv:101205960 1028.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0888 Sed-Chr4:8028956 Sed04g3065 Sed-Chr4:41679001 2.10E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g555 . . . . . . . . . . . . . . Sed04g3065 . . Bhi07g00146 Tan04g1690 Cmetu08g1955 Lac13g1666 . . . . . . . . . . . Cone19ag0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38310 PF00628 PHD 1.70E-09 CL0390 Sed TR