Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3071 ATGGAGGCACCGTTTCACGTTTGTTTCTTGTGGAAGGTAAAGCAGGCAGTTAGTTGTTCAGATATCGTTAAAGATGCCCATACAGAGTCAACTGCCATAGATTTTGTTCCAAACATTCAATCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATTGATGATCTATCTACACACCTCAGATCTATTGTCAAGTGCCCTATGCCTAGTGGTTTTTATGCTGTTTTCGATGGCCATGGAGGGCCTAATGCAGCTTCTTTTGTCAAGAGGAATGCTATGAGATTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTGATTCTATTTCCATGAAAGATTTAGAGAATTCTCACCGCAAATCATTTTTACTGGCAGATCTTGCCCTGGCTGATGAACAAAGTGTTGGCAGCTCATGTGGGACAACGGCGTTGACGGCATTGGTTCTTGGAAGCCATTTGCTTGTCGCAAACGCTGGCGACTGCCGAGCAGTCCTATGTAGGAAAGGCGTTGCAGTTCCGATGTCTCAAGATCACAGGCCTTCTAATTTACTCGAGCTCAAGCGAGTGGAAGGGATGGGCGGGTTTGTAGATGACGGGTACGTGAATGGCAATATTGCAGTAACCAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATGGCTCATCATCACCTCTAATTGCTGAACCACAACTGGAGCATGTTGTTCTAACTCAGGATGATGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGATGTTATGTCAAGCCAATATGCTGTCAGTCTTGTTCGACGCGGGTTGAGGAAGCACCATGACCCGGATCAAAGTTCCCGAGAATTAGTCCACGAAGCTTTGCGCCTCAACACATCAGATAATCTTACCGCAGTTGTAATCTGCTTTTCTTCTCCCCGCTGCGTTCCGCAGCAGCGAATATGGAAGCCGTGTAGTCTGACAGAAGAGGCTAGAAGTAAATTGAGGAACTTGTTAGAAGGAAACTGA 1029 45.58 MEAPFHVCFLWKVKQAVSCSDIVKDAHTESTAIDFVPNIQSGSYADIGARDSMDDEHVCIDDLSTHLRSIVKCPMPSGFYAVFDGHGGPNAASFVKRNAMRLFFEDADWLKMLDIDSISMKDLENSHRKSFLLADLALADEQSVGSSCGTTALTALVLGSHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGNIAVTRTLGDWDLKLPNGSSSPLIAEPQLEHVVLTQDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHHDPDQSSRELVHEALRLNTSDNLTAVVICFSSPRCVPQQRIWKPCSLTEEARSKLRNLLEGN 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41746104 41749939 + Sed0009161.1 Sed04g3071 711674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3071 342 CDD PP2Cc 41 310 IPR001932 -
Sed04g3071 342 SMART PP2C_SIG_2 55 310 IPR001932 -
Sed04g3071 342 SUPERFAMILY PP2C-like 33 311 IPR036457 -
Sed04g3071 342 ProSiteProfiles PPM-type phosphatase domain profile. 40 310 IPR001932 -
Sed04g3071 342 PANTHER PROTEIN PHOSPHATASE 2C 38 310 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed04g3071 342 Pfam Protein phosphatase 2C 48 302 IPR001932 -
Sed04g3071 342 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
Sed04g3071 342 SMART PP2C_4 30 308 IPR001932 -
Sed04g3071 342 Gene3D - 19 314 IPR036457 -
Sed04g3071 342 FunFam Probable protein phosphatase 2C 22 23 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3071 Sed-Chr4:41746104 Sed07g0626 Sed-Chr7:4735366 5.30E-98 dispersed
Sed04g3071 Sed-Chr4:41746104 Sed09g0625 Sed-Chr9:7796229 2.60E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3071 K14803 - csv:101207477 568.54