Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3077 ATGGCTCGTAAGGGTAATCAACAGAAAACAGGGTCAGAGCGCCATGCATCAAACAGTAAAAAGAGAGGTTCAGACTTGCAGTCAAAGGGACAGGGAAGAGCACGAGAGATAAAAGTATTTCCAGGTGAGGAACTACCAAATGACAACCAGCATAGTAGATCCTCTGAGGAAGGCATGGTGAATAGGGACTCCGGTGAGGGCATAAAGAATGTAAAGAAATCTTCAAAGTCCTCGAGTAAAGAAAAACAAGGAATGGAAGAACTTCACACTTCAGACAAGCCAGCATTTTCCCCAAAAGAATTTGGGAACTGCAATGGAAATAACGAGGGTTCTGGTATAGGAGAACAAGACAAGGGGTCTACTGGTGATAGAGAGAGGGTCCATTTAGATTGCAATTTCAGCTGCTTTTTGAATAGAGAACACATCAGAAGTGTGATGGATAATCTAAAATTTTCAGATAATGTCTTGGTGAAAAGCTTTGTGGAATCTATGTCATCAATATTTGAAGCAGCCCACGTGTTGCTGGAGCATCAGAGACCTCTGTTTACTTCTATGAAGAACAATTTACTTAACACAAGTGACTATGTTGGAAAAAGGATTAAGAAGGCATATCCCGTTGCTCTAAAGTGGATGATGCATTTGGGGAACATAATGCTTCTCTTATCAATTGTATGGTTGGACTGTGCCCTAAGGGGCATAGATTCCTTTGTACGTATGGGGACAACATCCTTCTTCTCAGTTATATGGTTCTCCATTTTTTCAACAATAGCAATGGTTGGAATTCTAAAATTCCTTGTTGTCTTGGCAATAGCTGCTACCCTTGGTATTTTTGTTGGGTTTGCCTTTTCAATTTTGGTCATCGCCATCTCTGGAGCAGCTTTCCTTTGGTTTTACGGAAACTTTTGGACAACAATAATGATCATATCTCTTGGAGGATTGGCATTTATATTGAGCCGCGAACGAATTGCACTTTTTATCACGACTTTGTATTCAGTATATTGTGGATGGGCATACACTGGATGGCTTGGTTTGCTTTTGGGCCTGAATTTATCATTTATTTCAAGTGATGCTCTGATTTATTTCCTAAAGAACAACATGGAGCATAGGAGATCAAACAGATATTCTGACCATACAGCTGGGATGCAAGATCAGCCTGCCTTCTTTCATGACGATCCTACGCAAGCATCATCTTCTGAATTTAGTGCAGGTCTTGCTGCTGATCGCAGTCAAGGTATACCTTCGACCAGTGGAGCTGATTCAGAGATATCTTCTGAAGATGAAGTCCTCCGTTTGCTGAATTGTACAGATCACTATTCAGTTTTAGGATTGTCTCGATATGAGAATATAGATCCTTCTCTGCTCAAAAAGGAGTACAGAAAAAAGGCAATGTTGGTCCATCCTGATAAAAATATGGGCAATGAAAAGGCTGCAGAAGCATTTAAAAAACTTCAAAATGCATACGAGGTTTTACTTGATTCGGTAAAGCGAAAAAACTATGATGATGAGCTAAGAAGGGAAGAGCTGCTAAACATTTTCCGCAGGTTTCAGAGTGATTCACAGAAGAGGGGAGGGAGTGGTCCATTTCCATTTTCACGTTCAGCAGCAGATAGAGAGGATCCTTCGGGTGAATCAAGACGAATAGCTTGCAAAAAGTGCAACAATTTTCATTTATGGATTCACACTAGGAAATTGAAATCTCAAGCAAGATGGTGCCAGGAATGCAAAGATTTTCATCAAGCTAAGGATGGGGATGGGTGGGTGGAGCAATCTTCTCAGCCTTTTCTTTTTGGAATACTGCAGAAGGTGGATGCTCCTTTTGCATATGTATGTGCTGAGAGCCGAATATACAACGCTACTGAATGGTACATTTGTCAGGGAATGAGATGTCCGGCCAACACCCACCGGCCAAGTTTTCATGTAAACACGAGTGTGACCTCGAAGCAAAACACGGGTAGAGGATCGAGTTCTAGCCAAAGAGCAAGCCAAATGCCGTCATCAAATATAGATGAGAACATGATGAACATGACAGAAGAAGAGTTCTTCAAGTGGTTTCAGAATGCCGTGCAGACAGGTGCGTTCGAAAATGCGGAGAGCCCATCGGCTAAAGCGGGAGGAAGTTGTAACAAGAGTAGTAGCAACAGTGGCAGTGGGAACAAGAAGAAGAAAAAGGGTAAGAAGCAATGGTGA 2187 41.79 MARKGNQQKTGSERHASNSKKRGSDLQSKGQGRAREIKVFPGEELPNDNQHSRSSEEGMVNRDSGEGIKNVKKSSKSSSKEKQGMEELHTSDKPAFSPKEFGNCNGNNEGSGIGEQDKGSTGDRERVHLDCNFSCFLNREHIRSVMDNLKFSDNVLVKSFVESMSSIFEAAHVLLEHQRPLFTSMKNNLLNTSDYVGKRIKKAYPVALKWMMHLGNIMLLLSIVWLDCALRGIDSFVRMGTTSFFSVIWFSIFSTIAMVGILKFLVVLAIAATLGIFVGFAFSILVIAISGAAFLWFYGNFWTTIMIISLGGLAFILSRERIALFITTLYSVYCGWAYTGWLGLLLGLNLSFISSDALIYFLKNNMEHRRSNRYSDHTAGMQDQPAFFHDDPTQASSSEFSAGLAADRSQGIPSTSGADSEISSEDEVLRLLNCTDHYSVLGLSRYENIDPSLLKKEYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSVKRKNYDDELRREELLNIFRRFQSDSQKRGGSGPFPFSRSAADREDPSGESRRIACKKCNNFHLWIHTRKLKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGILQKVDAPFAYVCAESRIYNATEWYICQGMRCPANTHRPSFHVNTSVTSKQNTGRGSSSSQRASQMPSSNIDENMMNMTEEEFFKWFQNAVQTGAFENAESPSAKAGGSCNKSSSNSGSGNKKKKKGKKQW 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41790104 41797549 + Sed0005370.1 Sed04g3077 711680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3077 728 Gene3D DnaJ domain 424 518 IPR036869 -
Sed04g3077 728 Pfam Cleavage inducing molecular chaperone 543 641 IPR032843 -
Sed04g3077 728 PRINTS DnaJ domain signature 475 495 IPR001623 -
Sed04g3077 728 PRINTS DnaJ domain signature 458 473 IPR001623 -
Sed04g3077 728 MobiDBLite consensus disorder prediction 8 42 - -
Sed04g3077 728 Pfam DnaJ domain 436 500 IPR001623 -
Sed04g3077 728 MobiDBLite consensus disorder prediction 49 94 - -
Sed04g3077 728 CDD DnaJ 436 492 IPR001623 -
Sed04g3077 728 ProSitePatterns Nt-dnaJ domain signature. 480 499 IPR018253 -
Sed04g3077 728 SMART dnaj_3 435 495 IPR001623 -
Sed04g3077 728 SUPERFAMILY Chaperone J-domain 398 499 IPR036869 -
Sed04g3077 728 MobiDBLite consensus disorder prediction 695 715 - -
Sed04g3077 728 MobiDBLite consensus disorder prediction 1 123 - -
Sed04g3077 728 MobiDBLite consensus disorder prediction 519 542 - -
Sed04g3077 728 MobiDBLite consensus disorder prediction 101 115 - -
Sed04g3077 728 ProSiteProfiles dnaJ domain profile. 436 503 IPR001623 -
Sed04g3077 728 MobiDBLite consensus disorder prediction 641 667 - -
Sed04g3077 728 MobiDBLite consensus disorder prediction 695 728 - -
Sed04g3077 728 PANTHER OS03G0832900 PROTEIN 1 728 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3077 K09534 - - rcu:8261296 818.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3077 Sed-Chr4:41790104 Sed07g0895 Sed-Chr7:6449962 8.50E-77 dispersed
Sed04g3077 Sed-Chr4:41790104 Sed13g0680 Sed-Chr13:4705908 8.20E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g34 Blo01g00041 . . Bda08g00322 . . . Bma05g01008 Cmo08g01259 Cmo17g00374 . . . . . . . . . . . . . . Cla06g00411 Cam06g0434 Cec06g0440 Cco06g0439 Clacu06g0420 Cmu06g0420 Cre06g1199 . . . . . Csa06g01853 Chy11g01588 . . . . . Bpe05g00806 . . . Sed04g3077 . . Cma08g01294 Cma17g00385 Car08g01159 Car17g00355 Cpe12g00336 Cpe17g00081 Bhi12g01953 Tan06g2785 Cmetu11g0566 . . . Lcy12g0870 . . . . . . . . . . Cme11g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008621 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 0 1 1 1 1 35