Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3084 ATGGCCAAGTATCCAACTTTCCATCTCTGTCTAGTAATGTTTGAGCTTATTGCGATCGCTTCGGCGAACACGAAAGCATCGTATGGAGGAGGGGACGAAAACCAGCCGTCGTGCGACACACCCTCTATCTGCCCCGATGCAGAAGCCATCATCTTCTCTTGGGTCCAAACTGCTGTTAATGAAGACCCCCGGATGGCTGCATCGCTGCTTCGACTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCTTCAGTGTTGTTGGATGATAATGAGAACTTTGTTGGTGAGAAAACTGCAGCTCCTAATGTGAACTCACTGAGGGGGTTTGAAGTGATTGATGCCATAAAATCTGAGATAGAATCTGTTTGCCCACAGACAGTTTCATGTGCTGACATTCTTGCAATTGCAGCTAGAGACTCTGTTGCACTTTCAGGAGGACCTGTTTGGAAAGTGGAATTTGGGAGAAAAGATAGCTTAAGTGCAAGCAAAACAGCAGCACAAAACAACATTCCTGCACCAAACTCCACTGTAGCAGCTTTGGTTTCTAAGTTCCAGAACCTTGGCCTTAATCTCAGGGATATGGTTGCTCTCTCAGGGGCGCACACACTCGGACGAGCTCGGTGTGCTACATTCAATTCTAGGCTGCAAGACACTAGGAACAGCCCTGGCGAAGGAGGAAACCAAGAGTTTATCGAGTCGCTAAAGCAGCTGTGCTCAGAACCTGGTGCCAGCTCGCTGCTGGCACAGCTTGACCTCGTAACCCCAGTGTCATTCGACAATCAGTATTACACCAATCTTCTCTCTGGAGAGGGGTTGCTCCAGTCCGATCAGGTTCTAGTTACTGGGGATTACCAGACAAGGGAATTAGTCGAAACCTATGCTGTGGACCCAACCACCTTCTTTGAAGACTTCAAGCAGTCAATGGTGAGGATGGGAAGCCTCAAACCTGCCACCGGAACACAGACCATGATCCGAACTAACTGTCGAACTATAAACTAG 1002 48.3 MAKYPTFHLCLVMFELIAIASANTKASYGGGDENQPSCDTPSICPDAEAIIFSWVQTAVNEDPRMAASLLRLHFHDCFVNGCDASVLLDDNENFVGEKTAAPNVNSLRGFEVIDAIKSEIESVCPQTVSCADILAIAARDSVALSGGPVWKVEFGRKDSLSASKTAAQNNIPAPNSTVAALVSKFQNLGLNLRDMVALSGAHTLGRARCATFNSRLQDTRNSPGEGGNQEFIESLKQLCSEPGASSLLAQLDLVTPVSFDNQYYTNLLSGEGLLQSDQVLVTGDYQTRELVETYAVDPTTFFEDFKQSMVRMGSLKPATGTQTMIRTNCRTIN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41831546 41832797 - Sed0016558.1 Sed04g3084 711687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3084 333 Gene3D Peroxidase, domain 2 172 313 - -
Sed04g3084 333 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 ProSiteProfiles Plant heme peroxidase family profile. 44 333 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 FunFam Peroxidase 172 312 - -
Sed04g3084 333 PANTHER PEROXIDASE 72-RELATED 42 331 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 Pfam Peroxidase 54 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 Gene3D - 43 333 - -
Sed04g3084 333 CDD secretory_peroxidase 44 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed04g3084 333 FunFam Peroxidase 41 183 - -
Sed04g3084 333 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Sed04g3084 333 SUPERFAMILY Heme-dependent peroxidases 42 333 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3084 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3084 Sed-Chr4:41831546 Sed13g1017 Sed-Chr13:8299105 2.10E-83 dispersed
Sed04g3084 Sed-Chr4:41831546 Sed13g1016 Sed-Chr13:8275705 4.00E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3084 K00430 - csv:101205763 556.214