Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3085 ATGTGTGTGATGGAGAAGGAAAAAGAAGAGTTGTTAAAGAAAGAGAATTGTGATAATTCTATGGCAAATTCTAGTCTGTTATTCTCCGATCCGATTCCGGGTGGCACCTTCTTGGATTTGTTAGCCACCCACGATTACAGCCCCTCTTTATATGATCTCTTCTCCGCCGCACCGCCGCCGTCCTCCGCCGTGCCGGACTCGTCGGAAGTCTTGAATGCTCCTCTCACTCCTAATTCCTCCTCCATTTCGTGCTCTTCCAATGAAAAACCTTTCGACGCCGACGAGGTCGATCGGGGTAACTCCCCTTTCAATAAACAGTTGAAGCCAAAAAACAAGAACAAAAAAAGGGCAAGAGAGCCAAGATTCGCGTTCATGACAAAGAGCGAAGTGGATCACTTGGACGACGGTTACAGGTGGCGAAAGTACGGCCAAAAAGCCGTTAAAAACAGCCCTTATCCGAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAGAAGCGCTTCGAACGCTGCTCCGACGACCCCTCCGTCGTCGTCACCACCTACGAAGGCCAGCACACCCACCAGAGCCCGATCATGCCACGTGGCGCCCTCTCCGCCGCCCTGCTCCAACCGCCCCTTCTTTTCCCCCCGCCGCCACCACCGCCGCATTATCACACGTACGCTCCGCCGCCGCCGCCGGTTGTCACGTGCGGGGGTTTTGATCCGGTGTTTCATGCTTTTGGTGAGGAACGGCGTCGTATTGGCGGATCTGATTCTTTTAAAGACCATGGCCTTTTGCAAGATATGATCCTACCGTCATCCTCCTTACACGTCCCCAAAGAAGAGTAA 837 53.41 MCVMEKEKEELLKKENCDNSMANSSLLFSDPIPGGTFLDLLATHDYSPSLYDLFSAAPPPSSAVPDSSEVLNAPLTPNSSSISCSSNEKPFDADEVDRGNSPFNKQLKPKNKNKKRAREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRFERCSDDPSVVVTTYEGQHTHQSPIMPRGALSAALLQPPLLFPPPPPPPHYHTYAPPPPPVVTCGGFDPVFHAFGEERRRIGGSDSFKDHGLLQDMILPSSSLHVPKEE 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41837200 41839117 - Sed0026754.1 Sed04g3085 711688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3085 278 SMART WRKY_cls 133 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3085 278 SUPERFAMILY WRKY DNA-binding domain 125 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3085 278 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 197 IPR044810 GO:0003700(InterPro)
Sed04g3085 278 ProSiteProfiles WRKY domain profile. 128 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3085 278 MobiDBLite consensus disorder prediction 62 88 - -
Sed04g3085 278 MobiDBLite consensus disorder prediction 62 120 - -
Sed04g3085 278 FunFam WRKY transcription factor 57 119 193 - -
Sed04g3085 278 Gene3D WRKY domain 118 194 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g3085 278 Pfam WRKY DNA -binding domain 134 191 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3085 Sed-Chr4:41837200 Sed12g0763 Sed-Chr12:4605024 1.20E-55 dispersed
Sed04g3085 Sed-Chr4:41837200 Sed02g1129 Sed-Chr2:48492949 6.30E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38311 PF03106 WRKY 1.80E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3085 - - - 0.0