Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3086 | ATGGCGTCGTCTGTTCTTGCGAACTCCGATCGCGTACGGGAGTCATCGAGGAAGCAGAAGAAGAAGAAAACCCTTGGAAACAGAGAAATTCATCAAAACCAGAGCCACATCACATGGAAATCTCAAGCTCAGCAAGATATTTACTCGTCCAAGCTAGTCCGAGCGTTGAATCAAGTGCGGCTCAGTCCTTCCGGTGAGGCGCCGCCGCGCCGTGGCCGCGCCGTGCGTGAAGCCGCCGATAGAGTCCTGGCGGTGGCTGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATATTAACGAACAGGCTGAAGCTCAAGTTCAGGAAGCCGAAGAGATCGCAGAGAGCGGCCACCGCCGGGAACGGCCGGTCGAAGAAGCCGAGAGTCAGCGTATTGCGGTTGAAAGGGAAATCGTTGCCGGCGGTGCAAAGGAAAGTTAGGGTTCTTGGACGGCTCGTTCCCGGTTGCCGGAAAGAACCGCTTCCGGTTATCTTGGATGAGGCGACCGATTACATAGCTGCGCTTGAAATGCAAATTCGAGCCATGAGTGCGCTTGCTGATTTGCTCTCGGCTTCAACTTCTGTTGCAGGCTCTAGTGATTCCGCTCCTCCAAGCTGA | 615 | 55.77 | MASSVLANSDRVRESSRKQKKKKTLGNREIHQNQSHITWKSQAQQDIYSSKLVRALNQVRLSPSGEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRSQRAATAGNGRSKKPRVSVLRLKGKSLPAVQRKVRVLGRLVPGCRKEPLPVILDEATDYIAALEMQIRAMSALADLLSASTSVAGSSDSAPPS | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 41862879 | 41865271 | - | Sed0009798.1 | Sed04g3086 | 711689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3086 | 204 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Sed04g3086 | 204 | CDD | bHLH_AtIBH1_like | 130 | 185 | IPR044549 | GO:0006355(InterPro) | |
Sed04g3086 | 204 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 35 | 188 | IPR044660 | GO:0006355(InterPro) | |
Sed04g3086 | 204 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 144 | 191 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1131 | Sed-Chr2:48525292 | Sed04g3086 | Sed-Chr4:41862879 | 8.90E-46 | dispersed | |
Sed04g0412 | Sed-Chr4:3013345 | Sed04g3086 | Sed-Chr4:41862879 | 1.00E-35 | dispersed | |
Sed04g3086 | Sed-Chr4:41862879 | Sed11g0426 | Sed-Chr11:4051328 | 1.70E-30 | dispersed | |
Sed04g3086 | Sed-Chr4:41862879 | Sed12g0766 | Sed-Chr12:4636764 | 1.40E-53 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3086 | - | - | - | 0.0 |