Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3086 ATGGCGTCGTCTGTTCTTGCGAACTCCGATCGCGTACGGGAGTCATCGAGGAAGCAGAAGAAGAAGAAAACCCTTGGAAACAGAGAAATTCATCAAAACCAGAGCCACATCACATGGAAATCTCAAGCTCAGCAAGATATTTACTCGTCCAAGCTAGTCCGAGCGTTGAATCAAGTGCGGCTCAGTCCTTCCGGTGAGGCGCCGCCGCGCCGTGGCCGCGCCGTGCGTGAAGCCGCCGATAGAGTCCTGGCGGTGGCTGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATATTAACGAACAGGCTGAAGCTCAAGTTCAGGAAGCCGAAGAGATCGCAGAGAGCGGCCACCGCCGGGAACGGCCGGTCGAAGAAGCCGAGAGTCAGCGTATTGCGGTTGAAAGGGAAATCGTTGCCGGCGGTGCAAAGGAAAGTTAGGGTTCTTGGACGGCTCGTTCCCGGTTGCCGGAAAGAACCGCTTCCGGTTATCTTGGATGAGGCGACCGATTACATAGCTGCGCTTGAAATGCAAATTCGAGCCATGAGTGCGCTTGCTGATTTGCTCTCGGCTTCAACTTCTGTTGCAGGCTCTAGTGATTCCGCTCCTCCAAGCTGA 615 55.77 MASSVLANSDRVRESSRKQKKKKTLGNREIHQNQSHITWKSQAQQDIYSSKLVRALNQVRLSPSGEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRSQRAATAGNGRSKKPRVSVLRLKGKSLPAVQRKVRVLGRLVPGCRKEPLPVILDEATDYIAALEMQIRAMSALADLLSASTSVAGSSDSAPPS 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41862879 41865271 - Sed0009798.1 Sed04g3086 711689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3086 204 MobiDBLite consensus disorder prediction 1 42 - -
Sed04g3086 204 CDD bHLH_AtIBH1_like 130 185 IPR044549 GO:0006355(InterPro)
Sed04g3086 204 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 35 188 IPR044660 GO:0006355(InterPro)
Sed04g3086 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 191 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1131 Sed-Chr2:48525292 Sed04g3086 Sed-Chr4:41862879 8.90E-46 dispersed
Sed04g0412 Sed-Chr4:3013345 Sed04g3086 Sed-Chr4:41862879 1.00E-35 dispersed
Sed04g3086 Sed-Chr4:41862879 Sed11g0426 Sed-Chr11:4051328 1.70E-30 dispersed
Sed04g3086 Sed-Chr4:41862879 Sed12g0766 Sed-Chr12:4636764 1.40E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3086 - - - 0.0