Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3089 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCGTTCCGGCAACCTGATCCCACCTTCTCCTCCGTCGGTGTCATCGGAACCGCCCACTGCGGCGCCAAAGATTCCAAGGATACCCTTCTCTGGTTCTACGATTCCGGCAACTATGCTTCCGGCGACTTCTCCATGGCCGTCGTTCAGGCCAATCAGGTCCTCGAGGACCAGAGCCAGATTCAATCCGGCCCCTTCGGTACCTTCCTCGGAATCTACGACGGCCATGGCGGCCCCGACGCTGCTCGCTACGTCTGCGATAACTTGTTCAGGCGCTTTCAAGCTATTTCAGACGAAGAACAAGGAGTTGTGACTAGTGAATCCATTCTGAATTCTTTTCGTCAAACAGAGGAAGGATTCACAGCCCTCGTCTCAGAGTTGTGGAATACTCAACCTCAGATAGCAACAGTGGGGACGTGCTGTCTCGTAGGGGTTATACACGAGCAGACACTCTTCGTGGCGAGTCTAGGAGATTCTCGTGCAGTGTTGGGAAAGAAAGTTGGCAACACTGGAGAGATTGCCGCCATTCAGTTATCAACGGAGCATAATGCAAACCTTGAGGATATAAGGCATGAATTAAGAGATATGCATCCAAATGATCCTGAAATTGTGGTTCAAAGGCATGGAGTTTGGAGGGTGAAAGGCATTATACAGGTTTCTAGATCCATTGGGGATGTGTATATGAAACATGCTCGGTATAATACTGACAGAATCAGTGCTAAATTTAGACTTCCTGAACCGATGGATATGCCTATATTGTCTGCTGTACCTACGATTGTTGCTCATCCTCTCCATCCAAACGATTCTTTTCTTATATTTGCATCCGATGGACTTTGGGAACATCTAACCAATGAAAAAGCAGTGGATATTGTCCATAATCATCATCCTCGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTCCAAGAAGCAGCTAGAAAACGAGAGATGCGGTACTCAGATCTCCGTAAGATCGACAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGACCTTATATCCAGAAATAATACCCTCCTAGATCAGCCATTATCAGTCCGAAGTGCCTTAGACCATTGA 1149 47.35 MLRGFMNLLSLCWKPFRQPDPTFSSVGVIGTAHCGAKDSKDTLLWFYDSGNYASGDFSMAVVQANQVLEDQSQIQSGPFGTFLGIYDGHGGPDAARYVCDNLFRRFQAISDEEQGVVTSESILNSFRQTEEGFTALVSELWNTQPQIATVGTCCLVGVIHEQTLFVASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEDIRHELRDMHPNDPEIVVQRHGVWRVKGIIQVSRSIGDVYMKHARYNTDRISAKFRLPEPMDMPILSAVPTIVAHPLHPNDSFLIFASDGLWEHLTNEKAVDIVHNHHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRNNTLLDQPLSVRSALDH 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41882846 41887093 - Sed0000513.1 Sed04g3089 711692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3089 382 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169(InterPro)
Sed04g3089 382 PANTHER PROTEIN PHOSPHATASE 55 357 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g3089 382 Pfam Protein phosphatase 2C 81 326 IPR001932 -
Sed04g3089 382 SUPERFAMILY PP2C-like 65 359 IPR036457 -
Sed04g3089 382 SMART PP2C_4 48 356 IPR001932 -
Sed04g3089 382 Gene3D - 47 368 IPR036457 -
Sed04g3089 382 FunFam Probable protein phosphatase 2C 42 47 366 - -
Sed04g3089 382 ProSiteProfiles PPM-type phosphatase domain profile. 56 358 IPR001932 -
Sed04g3089 382 CDD PP2Cc 57 358 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3089 Sed-Chr4:41882846 Sed10g1033 Sed-Chr10:9117671 7.80E-114 dispersed
Sed04g3089 Sed-Chr4:41882846 Sed05g3510 Sed-Chr5:43766552 2.00E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3089 K01102 - csv:101207284 682.174