Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3094 ATGTCCAAACTTCTCCTCTCTGGAACCGCCGCCGATTCCAACTCCGGCCACCAACTCCACCACCACCAGCGCTCGCAGTCGATTTCGCCGCAGCGTTCTCGATTTGCTACAGCTCTGAGGAGAGGCGACGGCGCGGCGGCTTTGAAGAGAGGCTCTTCTTCGTTTCGACATTCTTCTCCTCTTCAGAGAGAGAGTAAGACAAGTGATTCTTTCGATGCGGCCGCCGGAGTTGGAACCGGCGGCGGATGCGACGGATGCGGCGGCTCTAGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTATTCATATTTTTGACCTAAATTATCGCATAATTTATTGGAACCGAGCTGCTGAATCTGTGTATGGATATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGGGCTTCTAGTCGATCCCGAGGACTTCGGCATTGCGAATGATGTAATTCATCGTGTCATGGAGGGTGAGAATTGGACTGGTCACTTCCCTGTCAAGAACAAGATGGGGCAAAAGTTTACAGTCGTTGCCACTAACTCTCCGTTCTACGACGATGGCACTTTGGTCGGGGTTATCTGTGTATCCAGCGATTCGCGGCCATTTCGAGAATTGAAGATTCCATTAGCAGGAGGTTCTAAACAGCAGGATGCAGATACGAGCATTGTTGGATCAAGAAACATGGTTTCAAGTAAACTTGGTCTTGATCCTCAGCAACCTCTTCAAGTGGCGATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATGCGAACAGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGTGATAGTTATCATCGCTATGATCATGGCTTTTCGGATGCAGCTCTTTGTGACCATCGGGAGGATGCAAATTCGAGTGGAGCTAGCACGCCTCGAGGAGATTCCACAGCTCATCATGGTGTGTTTTCCCAGGTTGAAGAGAAATTATCTGGCAAACTGGTAAGAGATTATGGTGGTGATGAGGTGAAAGGAAAACCTACCTTTCAGAAGACTTTATCCTCAAAAGCAGAAGATTGGATTACTAAGAAAGGGTTGTCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGAGAATCCGAAGCAAGGGCAGTTGCTCGTTTTGTTTGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTTCTCTTCACCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGCCAATAACGACGCCACAGGATCCTGGTCATCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTCTCAACAAGGTTGACTCGGAAATGGACTGCTTGGATAATGAAATCTTGTGGGAAGAACTTTCCATTGGGGGGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCGGTCAAAGTTTTTTCCAAACAGGAGTATTCAGATGATGTGATTCTATCCTTCAGACAGGAGGTATCCCTGATGAAAAAGCTTAGGCACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGCCTCTGCATTGTCACGGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGAAAATTAGATTGGAGACGCCGTGCTCATATGGCTTTGGACATTGCACGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGGGATTTGAAATCTTCGAACCTGTTAATTGATAAACACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCAACTTAAGCATGAGACTTATCTAACAACTAATACCGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGGAACGAGCCCGCAGATGAGAAGTCGGACGTATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAACCTCAATTCAATACAGGTAACTGGTGCTGTTGGATTCATGAACCAACGACTTGATATCCCCAAAGACGTGGATCCACAATGGGCTTCTTTAATTGAAAGCTGCTGGAATAGCGAACCTGCAAGTCGGCCGACATTCCAAGCTATGATAGAAAGGCTGAGAGAACTGCAGAGGAAGTTTGCTATTCAATTACAGGCAGCTCGTTCTGGTGGAGATAAGAACAACAACAACAACCCTCAAAAGGAAACATAA 2286 47.16 MSKLLLSGTAADSNSGHQLHHHQRSQSISPQRSRFATALRRGDGAAALKRGSSSFRHSSPLQRESKTSDSFDAAAGVGTGGGCDGCGGSSPAAVNFTNKQYLNILQSMGQSIHIFDLNYRIIYWNRAAESVYGYSAAEALGQDAIGLLVDPEDFGIANDVIHRVMEGENWTGHFPVKNKMGQKFTVVATNSPFYDDGTLVGVICVSSDSRPFRELKIPLAGGSKQQDADTSIVGSRNMVSSKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKMRTGENSLDREGGSGDSYHRYDHGFSDAALCDHREDANSSGASTPRGDSTAHHGVFSQVEEKLSGKLVRDYGGDEVKGKPTFQKTLSSKAEDWITKKGLSWPWKGTEQEGGESEARAVARFVWPWLQNDQEAEPANHKSFSSPGKPEMQQNDSHRAANNDATGSWSSFNVNSTSSVSSCGSTSSSALNKVDSEMDCLDNEILWEELSIGGQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRAHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKHWTVKVGDFGLSQLKHETYLTTNTGKGTPQWMAPEVLRNEPADEKSDVYSFGVILWELATEKIPWENLNSIQVTGAVGFMNQRLDIPKDVDPQWASLIESCWNSEPASRPTFQAMIERLRELQRKFAIQLQAARSGGDKNNNNNPQKET 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41915379 41921218 - Sed0016097.1 Sed04g3094 711697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3094 761 SUPERFAMILY PYP-like sensor domain (PAS domain) 101 208 IPR035965 -
Sed04g3094 761 MobiDBLite consensus disorder prediction 1 34 - -
Sed04g3094 761 CDD PAS 108 208 IPR000014 -
Sed04g3094 761 Gene3D Phosphorylase Kinase; domain 1 472 556 - -
Sed04g3094 761 SMART serkin_6 479 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 SUPERFAMILY Protein kinase-like (PK-like) 466 729 IPR011009 -
Sed04g3094 761 PRINTS Tyrosine kinase catalytic domain signature 592 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 PRINTS Tyrosine kinase catalytic domain signature 658 680 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 PRINTS Tyrosine kinase catalytic domain signature 639 649 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 PRINTS Tyrosine kinase catalytic domain signature 702 724 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 PRINTS Tyrosine kinase catalytic domain signature 553 566 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 Gene3D Transferase(Phosphotransferase) domain 1 557 761 - -
Sed04g3094 761 ProSiteProfiles PAS repeat profile. 97 168 IPR000014 -
Sed04g3094 761 Pfam Protein tyrosine and serine/threonine kinase 481 731 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 MobiDBLite consensus disorder prediction 271 292 - -
Sed04g3094 761 Gene3D PAS domain 109 211 - -
Sed04g3094 761 SMART pas_2 99 166 IPR000014 -
Sed04g3094 761 Pfam PAS fold 100 206 IPR013767 GO:0006355(InterPro)
Sed04g3094 761 MobiDBLite consensus disorder prediction 52 69 - -
Sed04g3094 761 PANTHER SERINE-THREONINE PROTEIN KINASE 55 734 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g3094 761 MobiDBLite consensus disorder prediction 1 73 - -
Sed04g3094 761 MobiDBLite consensus disorder prediction 270 292 - -
Sed04g3094 761 MobiDBLite consensus disorder prediction 405 437 - -
Sed04g3094 761 ProSiteProfiles Protein kinase domain profile. 479 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3094 761 MobiDBLite consensus disorder prediction 404 437 - -
Sed04g3094 761 NCBIfam PAS domain S-box protein 99 208 IPR000014 -
Sed04g3094 761 CDD STKc_MAP3K-like 485 731 - -
Sed04g3094 761 FunFam PAS domain-containing protein tyrosine kinase family protein 557 748 - -
Sed04g3094 761 FunFam PAS domain-containing protein tyrosine kinase 472 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3094 Sed-Chr4:41915379 Sed04g3096 Sed-Chr4:41916554 0.00E+00 dispersed
Sed14g1542 Sed-Chr14:23620914 Sed04g3094 Sed-Chr4:41915379 5.00E-39 dispersed
Sed04g3094 Sed-Chr4:41915379 Sed04g3095 Sed-Chr4:41915379 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79069 PF07714 PK_Tyr_Ser-Thr 4.30E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3094 - - - 0.0