Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3095 ATGGGAACTCCACCTGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAAGGTCAAGCTCATCTCAGGAAAGAGATGTCCAAACTTCTCCTCTCTGGAACCGCCGCCGATTCCAACTCCGGCCACCAACTCCACCACCACCAGCGCTCGCAGTCGATTTCGCCGCAGCGTTCTCGATTTGCTACAGCTCTGAGGAGAGGCGACGGCGCGGCGGCTTTGAAGAGAGGCTCTTCTTCGTTTCGACATTCTTCTCCTCTTCAGAGAGAGAGTAAGACAAGTGATTCTTTCGATGCGGCCGCCGGAGTTGGAACCGGCGGCGGATGCGACGGATGCGGCGGCTCTAGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTATTCATATTTTTGACCTAAATTATCGCATAATTTATTGGAACCGAGCTGCTGAATCTGTGTATGGATATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGGGCTTCTAGTCGATCCCGAGGACTTCGGCATTGCGAATGATGTAATTCATCGTGTCATGGAGGGTGAGAATTGGACTGGTCACTTCCCTGTCAAGAACAAGATGGGGCAAAAGTTTACAGTCGTTGCCACTAACTCTCCGTTCTACGACGATGGCACTTTGGTCGGGGTTATCTGTGTATCCAGCGATTCGCGGCCATTTCGAGAATTGAAGATTCCATTAGCAGGAGGTTCTAAACAGCAGGATGCAGATACGAGCATTGTTGGATCAAGAAACATGGTTTCAAGTAAACTTGGTCTTGATCCTCAGCAACCTCTTCAAGTGGCGATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATGCGAACAGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGTGATAGTTATCATCGCTATGATCATGGCTTTTCGGATGCAGCTCTTTGTGACCATCGGGAGGATGCAAATTCGAGTGGAGCTAGCACGCCTCGAGGAGATTCCACAGCTCATCATGGTGTGTTTTCCCAGGTTGAAGAGAAATTATCTGGCAAACTGGTAAGAGATTATGGTGGTGATGAGGTGAAAGGAAAACCTACCTTTCAGAAGACTTTATCCTCAAAAGCAGAAGATTGGATTACTAAGAAAGGGTTGTCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGAGAATCCGAAGCAAGGGCAGTTGCTCGTTTTGTTTGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTTCTCTTCACCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGCCAATAACGACGCCACAGGATCCTGGTCATCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTCTCAACAAGGTTGACTCGGAAATGGACTGCTTGGATAATGAAATCTTGTGGGAAGAACTTTCCATTGGGGGGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCGGTCAAAGTTTTTTCCAAACAGGAGTATTCAGATGATGTGATTCTATCCTTCAGACAGGAGGTATCCCTGATGAAAAAGCTTAGGCACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGCCTCTGCATTGTCACGGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGAAAATTAGATTGGAGACGCCGTGCTCATATGGCTTTGGACATTGCACGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGGGATTTGAAATCTTCGAACCTGTTAATTGATAAACACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCAACTTAAGCATGAGACTTATCTAACAACTAATACCGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGGAACGAGCCCGCAGATGAGAAGTCGGACGTATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAACCTCAATTCAATACAGGTAACTGGTGCTGTTGGATTCATGAACCAACGACTTGATATCCCCAAAGACGTGGATCCACAATGGGCTTCTTTAATTGAAAGCTGCTGGAATAGCGAACCTGCAAGTCGGCCGACATTCCAAGCTATGATAGAAAGGCTGAGAGAACTGCAGAGGAAGTTTGCTATTCAATTACAGGCAGCTCGTTCTGGTGGAGATAAGAACAACAACAACAACCCTCAAAAGGAAACATAA 2364 47.34 MGTPPAEELLRKIQELEEGQAHLRKEMSKLLLSGTAADSNSGHQLHHHQRSQSISPQRSRFATALRRGDGAAALKRGSSSFRHSSPLQRESKTSDSFDAAAGVGTGGGCDGCGGSSPAAVNFTNKQYLNILQSMGQSIHIFDLNYRIIYWNRAAESVYGYSAAEALGQDAIGLLVDPEDFGIANDVIHRVMEGENWTGHFPVKNKMGQKFTVVATNSPFYDDGTLVGVICVSSDSRPFRELKIPLAGGSKQQDADTSIVGSRNMVSSKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKMRTGENSLDREGGSGDSYHRYDHGFSDAALCDHREDANSSGASTPRGDSTAHHGVFSQVEEKLSGKLVRDYGGDEVKGKPTFQKTLSSKAEDWITKKGLSWPWKGTEQEGGESEARAVARFVWPWLQNDQEAEPANHKSFSSPGKPEMQQNDSHRAANNDATGSWSSFNVNSTSSVSSCGSTSSSALNKVDSEMDCLDNEILWEELSIGGQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRAHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKHWTVKVGDFGLSQLKHETYLTTNTGKGTPQWMAPEVLRNEPADEKSDVYSFGVILWELATEKIPWENLNSIQVTGAVGFMNQRLDIPKDVDPQWASLIESCWNSEPASRPTFQAMIERLRELQRKFAIQLQAARSGGDKNNNNNPQKET 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41915379 41921218 - Sed0016097.2 Sed04g3095 711698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3095 787 PANTHER SERINE-THREONINE PROTEIN KINASE 81 760 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g3095 787 FunFam PAS domain-containing protein tyrosine kinase family protein 583 774 - -
Sed04g3095 787 SMART pas_2 125 192 IPR000014 -
Sed04g3095 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 SUPERFAMILY PYP-like sensor domain (PAS domain) 127 234 IPR035965 -
Sed04g3095 787 CDD PAS 134 234 IPR000014 -
Sed04g3095 787 Coils Coil 6 26 - -
Sed04g3095 787 Gene3D Phosphorylase Kinase; domain 1 498 582 - -
Sed04g3095 787 Pfam Protein tyrosine and serine/threonine kinase 507 757 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 MobiDBLite consensus disorder prediction 78 95 - -
Sed04g3095 787 PRINTS Tyrosine kinase catalytic domain signature 665 675 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 PRINTS Tyrosine kinase catalytic domain signature 579 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 PRINTS Tyrosine kinase catalytic domain signature 728 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 PRINTS Tyrosine kinase catalytic domain signature 684 706 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 PRINTS Tyrosine kinase catalytic domain signature 618 636 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 MobiDBLite consensus disorder prediction 35 58 - -
Sed04g3095 787 ProSiteProfiles Protein kinase domain profile. 505 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 MobiDBLite consensus disorder prediction 297 318 - -
Sed04g3095 787 MobiDBLite consensus disorder prediction 75 99 - -
Sed04g3095 787 MobiDBLite consensus disorder prediction 296 318 - -
Sed04g3095 787 Gene3D Transferase(Phosphotransferase) domain 1 583 787 - -
Sed04g3095 787 MobiDBLite consensus disorder prediction 431 463 - -
Sed04g3095 787 FunFam PAS domain-containing protein tyrosine kinase 498 582 - -
Sed04g3095 787 ProSiteProfiles PAS repeat profile. 123 194 IPR000014 -
Sed04g3095 787 SUPERFAMILY Protein kinase-like (PK-like) 492 755 IPR011009 -
Sed04g3095 787 MobiDBLite consensus disorder prediction 430 463 - -
Sed04g3095 787 SMART serkin_6 505 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3095 787 Gene3D PAS domain 135 237 - -
Sed04g3095 787 NCBIfam PAS domain S-box protein 125 234 IPR000014 -
Sed04g3095 787 Pfam PAS fold 126 232 IPR013767 GO:0006355(InterPro)
Sed04g3095 787 CDD STKc_MAP3K-like 511 757 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3095 Sed-Chr4:41915379 Sed09g0310 Sed-Chr9:2768530 0.00E+00 dispersed
Sed04g3094 Sed-Chr4:41915379 Sed04g3095 Sed-Chr4:41915379 0.00E+00 tandem
Sed04g3095 Sed-Chr4:41915379 Sed04g3096 Sed-Chr4:41916554 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79070 PF07714 PK_Tyr_Ser-Thr 4.60E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3095 - - - 0.0