Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3096 ATGTCCAAACTTCTCCTCTCTGGAACCGCCGCCGATTCCAACTCCGGCCACCAACTCCACCACCACCAGCGCTCGCAGTCGATTTCGCCGCAGCGTTCTCGATTTGCTACAGCTCTGAGGAGAGGCGACGGCGCGGCGGCTTTGAAGAGAGGCTCTTCTTCGTTTCGACATTCTTCTCCTCTTCAGAGAGAGAGTAAGACAAGTGATTCTTTCGATGCGGCCGCCGGAGTTGGAACCGGCGGCGGATGCGACGGATGCGGCGGCTCTAGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTATTCATATTTTTGACCTAAATTATCGCATAATTTATTGGAACCGAGCTGCTGAATCTGTGTATGGATATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGGGCTTCTAGTCGATCCCGAGGACTTCGGCATTGCGAATGATGTAATTCATCGTGTCATGGAGGGTGAGAATTGGACTGGTCACTTCCCTGTCAAGAACAAGATGGGGCAAAAGTTTACAGTCGTTGCCACTAACTCTCCGTTCTACGACGATGGCACTTTGGTCGGGGTTATCTGTGTATCCAGCGATTCGCGGCCATTTCGAGAATTGAAGATTCCATTAGCAGGAGGTTCTAAACAGCAGGATGCAGATACGAGCATTGTTGGATCAAGAAACATGGTTTCAAGTAAACTTGGTCTTGATCCTCAGCAACCTCTTCAAGTGGCGATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATGCGAACAGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGTGATAGTTATCATCGCTATGATCATGGCTTTTCGGATGCAGCTCTTTGTGACCATCGGGAGGATGCAAATTCGAGTGGAGCTAGCACGCCTCGAGGAGATTCCACAGCTCATCATGGTGTGTTTTCCCAGGTTGAAGAGAAATTATCTGGCAAACTGGTAAGAGATTATGGTGGTGATGAGGTGAAAGGAAAACCTACCTTTCAGAAGACTTTATCCTCAAAAGCAGAAGATTGGATTACTAAGAAAGGGTTGTCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGAGAATCCGAAGCAAGGGCAGTTGCTCGTTTTGTTTGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTTCTCTTCACCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGCCAATAACGACGCCACAGGATCCTGGTCATCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTCTCAACAAGGTTGACTCGGAAATGGACTGCTTGGATAATGAAATCTTGTGGGAAGAACTTTCCATTGGGGGGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCGGTCAAAGTTTTTTCCAAACAGGAGTATTCAGATGATGTGATTCTATCCTTCAGACAGGAGGTATCCCTGATGAAAAAGCTTAGGCACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGCCTCTGCATTGTCACGGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGAAAATTAGATTGGAGACGCCGTGCTCATATGGCTTTGGACATTGCACGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGGGATTTGAAATCTTCGAACCTGTTAATTGATAAACACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCAACTTAAGCATGAGACTTATCTAACAACTAATACCGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGGAACGAGCCCGCAGATGAGAAGTCGGACGTATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAACCTCAATTCAATACAGGTAACTGGTGCTGTTGGATTCATGAACCAACGACTTGATATCCCCAAAGACGTGGATCCACAATGGGCTTCTTTAATTGAAAGCTGCTGGAATAGGTACACAGAGCTATGCTTATTCATAGTTTCTAGATACATGGTTTTAATTCTAATAAACATCAGAAGGATAAAAAACCAAAAATGA 2232 46.59 MSKLLLSGTAADSNSGHQLHHHQRSQSISPQRSRFATALRRGDGAAALKRGSSSFRHSSPLQRESKTSDSFDAAAGVGTGGGCDGCGGSSPAAVNFTNKQYLNILQSMGQSIHIFDLNYRIIYWNRAAESVYGYSAAEALGQDAIGLLVDPEDFGIANDVIHRVMEGENWTGHFPVKNKMGQKFTVVATNSPFYDDGTLVGVICVSSDSRPFRELKIPLAGGSKQQDADTSIVGSRNMVSSKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKMRTGENSLDREGGSGDSYHRYDHGFSDAALCDHREDANSSGASTPRGDSTAHHGVFSQVEEKLSGKLVRDYGGDEVKGKPTFQKTLSSKAEDWITKKGLSWPWKGTEQEGGESEARAVARFVWPWLQNDQEAEPANHKSFSSPGKPEMQQNDSHRAANNDATGSWSSFNVNSTSSVSSCGSTSSSALNKVDSEMDCLDNEILWEELSIGGQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRAHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKHWTVKVGDFGLSQLKHETYLTTNTGKGTPQWMAPEVLRNEPADEKSDVYSFGVILWELATEKIPWENLNSIQVTGAVGFMNQRLDIPKDVDPQWASLIESCWNRYTELCLFIVSRYMVLILINIRRIKNQK 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41916554 41921218 - Sed0016097.3 Sed04g3096 711699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3096 743 SUPERFAMILY Protein kinase-like (PK-like) 466 716 IPR011009 -
Sed04g3096 743 MobiDBLite consensus disorder prediction 1 34 - -
Sed04g3096 743 CDD PAS 108 208 IPR000014 -
Sed04g3096 743 FunFam PAS domain-containing protein tyrosine kinase 472 556 - -
Sed04g3096 743 SUPERFAMILY PYP-like sensor domain (PAS domain) 101 208 IPR035965 -
Sed04g3096 743 NCBIfam PAS domain S-box protein 99 208 IPR000014 -
Sed04g3096 743 ProSiteProfiles PAS repeat profile. 97 168 IPR000014 -
Sed04g3096 743 SMART serkin_6 479 729 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3096 743 MobiDBLite consensus disorder prediction 271 292 - -
Sed04g3096 743 FunFam PAS domain-containing protein tyrosine kinase family protein 557 721 - -
Sed04g3096 743 SMART pas_2 99 166 IPR000014 -
Sed04g3096 743 Pfam Protein tyrosine and serine/threonine kinase 481 716 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3096 743 MobiDBLite consensus disorder prediction 52 69 - -
Sed04g3096 743 MobiDBLite consensus disorder prediction 1 73 - -
Sed04g3096 743 MobiDBLite consensus disorder prediction 270 292 - -
Sed04g3096 743 Gene3D PAS domain 109 211 - -
Sed04g3096 743 MobiDBLite consensus disorder prediction 405 437 - -
Sed04g3096 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3096 743 MobiDBLite consensus disorder prediction 404 437 - -
Sed04g3096 743 ProSiteProfiles Protein kinase domain profile. 479 743 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3096 743 PANTHER SERINE-THREONINE PROTEIN KINASE 55 715 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed04g3096 743 CDD STKc_MAP3K-like 485 716 - -
Sed04g3096 743 Gene3D Phosphorylase Kinase; domain 1 472 556 - -
Sed04g3096 743 Gene3D Transferase(Phosphotransferase) domain 1 558 720 - -
Sed04g3096 743 Pfam PAS fold 100 206 IPR013767 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3094 Sed-Chr4:41915379 Sed04g3096 Sed-Chr4:41916554 0.00E+00 dispersed
Sed04g3096 Sed-Chr4:41916554 Sed09g0310 Sed-Chr9:2768530 7.3e-310 dispersed
Sed04g3095 Sed-Chr4:41915379 Sed04g3096 Sed-Chr4:41916554 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79071 PF07714 PK_Tyr_Ser-Thr 3.10E-61 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3096 - - - 0.0