Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3104 ATGGCTCCGAGCATGTCCTGTCATGCCGCTCTTCATCCTCCGCATGCAGTGACTCCAAAACACAACAACAAAAATCTGGACAGGGCAAGAAACCTGGTAAAACGAATTGGAATCGCTTCAATTCAATCGTCTCCTCTCGAATCCCTCCGAAATGGGAACTGGGTCAAGCTCATCTGCGGTGCAAGTTTCGAGGATGTGGTTGATATTAGGAATCTCTCCCTTGTGTACACCCTTGCTGGGGTTGATTGTATTGATTGTGCTGCTGATGAATCGGTTGTGAGTGCGGTTAATGAGGGGATTCAAGCTGCAAGAGGGATCGTTGGTGTTCGTAGGCCTTGGGTGATGATTAGCGTCAACGATGACCAAGATCTTCACTTCCGTAAAGCTGAGTTTGATCCTGAGGAATGCCCAGTTGACTGTTCAAGGCCTTGTGAAATTGTTTGCCCTGCAAATGCCATCTCACTACATGAAGAAACAATGAAAGAACTTTCACAAGTGGGCGGAGTCATCACGGAGCGCTGTTATGGTTGTGGCCGTTGCTCTCCAGTCTGCCCATATGATAAAATAAAGCTTGTCACATATGTAAGAGATGCTGCTACTACTGCTAAACTTATAAAACGGGTTGACGTCGACGCGTTGGAGATTCACACGAATGGAAGACAAACCACTTCTTTTCAAGAGCTTTGGGATAAGTTAGGAGACTCATCCAAATATCTAAGGCTAGTAGCAATAAGCCTTCCTAATATTGGGGACTTAACAGTGTCTACAATGAAAACTATGTACTCGACAATGGAATCTCGGCTCCATTGTTTGAACTTATGGCAGTTAGATGGACGCCCGATGAGTGGAGACATTGGACGAGGTGCCACAAGGGAAACAATTGCTTTTGCTGCCCAGTTAGCTCTTTCCAGCAATCGTCCTCCCGGCTTCCTTCAACTGGCTGGTGGCACAAATTTTCACACTGTTGATGGCTTGAAGAAAAAGAGACTTTTTCAATCCATATCAACTATTAGTAAGTTTGATATTTCACCGTTTCTCATTTACTTCAATCGACAGTTTCACAATGCTGGTTTTTCATTCTAG 1083 44.78 MAPSMSCHAALHPPHAVTPKHNNKNLDRARNLVKRIGIASIQSSPLESLRNGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADESVVSAVNEGIQAARGIVGVRRPWVMISVNDDQDLHFRKAEFDPEECPVDCSRPCEIVCPANAISLHEETMKELSQVGGVITERCYGCGRCSPVCPYDKIKLVTYVRDAATTAKLIKRVDVDALEIHTNGRQTTSFQELWDKLGDSSKYLRLVAISLPNIGDLTVSTMKTMYSTMESRLHCLNLWQLDGRPMSGDIGRGATRETIAFAAQLALSSNRPPGFLQLAGGTNFHTVDGLKKKRLFQSISTISKFDISPFLIYFNRQFHNAGFSF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41954974 41958922 - Sed0008389.3 Sed04g3104 711707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3104 360 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 127 158 IPR017896 -
Sed04g3104 360 Pfam 4Fe-4S dicluster domain 139 187 IPR017896 -
Sed04g3104 360 Gene3D - 110 210 - -
Sed04g3104 360 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 165 194 IPR017896 -
Sed04g3104 360 Pfam Iron-Sulfur binding protein C terminal 204 335 IPR021039 -
Sed04g3104 360 SUPERFAMILY 4Fe-4S ferredoxins 120 199 - -
Sed04g3104 360 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 174 185 IPR017900 -
Sed04g3104 360 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 37 316 IPR013283 GO:0000054(PANTHER)|GO:0005506(PANTHER)|GO:0005524(PANTHER)|GO:0006413(PANTHER)|GO:0006415(PANTHER)|GO:0043024(PANTHER)
Sed04g3104 360 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3104 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3102 Sed-Chr4:41954974 Sed04g3104 Sed-Chr4:41954974 8.20E-197 dispersed
Sed04g3103 Sed-Chr4:41954974 Sed04g3104 Sed-Chr4:41954974 2.70E-128 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g65 . . Bda03g01182 . Bpe04g01115 . Bma04g01126 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0721 . . . . Csa06g01740 Chy11g01566 . . . . . . . . . Sed04g3104 . . . Cma17g00367 . Car17g00340 . . Bhi12g01926 Tan06g2753 Cmetu11g0714 . . . Lcy12g0804 . . . . . . . Lsi09g01487 . . Cme11g02078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 35