Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3105 ATGGCATTTTGGTGGTCTCTGATCGTTCTAGGAATTGCTTACGCGATCTGCAGGTTTCTCTTGATGCTCATCCCTCCCAATGTGCCGTCGATCGAAGTCGATGCATCCGACGTTATGGACGACGGGAATCAGACGCAGGAGAACAGCTACATATATATACCACCTAGGGTCAAGACGCAACAGCAAGACAAGAAAGTCCAATGTTATGAGCCTGCAACTATGAAATACTTGGGCTTTTTTCCTGCATTGTCGCGAGAAGAGGTCAAGGAGCGTGTTGCTTCAGCCAGGAAAGCACAGACAGAATGGGCCAAAAGTAGCTTCAAGCAAAGGCGTTTGTTTTTACGGATACTTTTGAAGTATATAATTGAACATCAAGAGCTTATTTGCGAGATCTCCTCCCGTGACACTGGGAAAACAATAGTGGATGCTAATATGGGAGAAATAATGGCGACATGTGAAAAGATTACTTGGCTTCTCTCAGAGGGTGAGAAATGGATGAAGCCTGAGAGTCGATCATGTGGAAGGGCAACCTTTCACAAGAAAGCCCGCGTAGAATTTCATCCCCTTGGAGTTATTGGGGCAATAGTCCCATGGAACTATCCATTCCATAACCTTTTCAATCCAGTGCTTGCAGCAGTCTTTGCTGGAAATGGCATTATAGTTAAGGTCTCAGAAAATGCAAGTTGGTCAGGATGCTTCTACATTAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGTTTGGTCGATGTCATAACAGGGTTTGCTGAAACAGGGGAAGCACTAGTATCTTCAGTAGACAAAATGATATTTGTTGGATCTACGGGTGTGGGTAGAATGATTATGAAAACTGCTGCTGACACACTTATTCCGGTTACTCTTGAGCTGGGTGGAAAGGACGCTTTTATTGTGTGTGAGGATGTAGATTTGGATCACGTTGTAAACGTTGCTCTCAGGGCATCTATTACATCAAGTGGACATAACTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAACATTTATTCGTCGTTTGTGGATAAAATATCTGGACGTATAAAAGCTATAACAGTTGGTCCTCCGTTAGCCGGTAAATATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTTGTAAATGAGGCCTTAGACAGTGGGGCAAAAGTTGTTGCTCGTGGAACTTTTGGACATTTGCCAGAAGGTGCCGTGGATCAATATTTCCCACCTACTGTTATTGTTGATGTCAACCATACCATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATCCTGCCTATAATGAAGTTCAGTACGGACGATGAGGCGGTGAAGCTTGCAAATGATTCAAGATTTGGGCTTGGCTGTTCTGTGTTTTCTGGCAGTCAGCAGCGTGCCAAGAATATCGCTTCGCAGATACGTTCTGGAAATGTTGCAATTAACGACTTTGCCACAAATTATTTGTGTCAGTCCTTGCCATTCGGTGGCGTAAAAGAGAGTGGATTTGGTCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTTGTCAAAGCTGTTGTTGAGGATAGGTGGTGGCCATACATTCAAACCAAGCATCCAAAGCCTCTTACGTATCCTGTTGCAGATAACGCATTCGAGTTTCAAATGTCACTTGTTGAAGCTATGTACGGCCTCAACATATGGGATCAATTAAAAGCATTGGTCAATGTTCTGAAGATGCTGTCCGAGCAGAACACTTCGGCTAAAGATAACTCTGCCATTGGCGATGAAAGTAAGAGAGCTGATTGA 1812 44.21 MAFWWSLIVLGIAYAICRFLLMLIPPNVPSIEVDASDVMDDGNQTQENSYIYIPPRVKTQQQDKKVQCYEPATMKYLGFFPALSREEVKERVASARKAQTEWAKSSFKQRRLFLRILLKYIIEHQELICEISSRDTGKTIVDANMGEIMATCEKITWLLSEGEKWMKPESRSCGRATFHKKARVEFHPLGVIGAIVPWNYPFHNLFNPVLAAVFAGNGIIVKVSENASWSGCFYIRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKTAADTLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASITSSGHNCTGAERFYVHKNIYSSFVDKISGRIKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNEALDSGAKVVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVKLANDSRFGLGCSVFSGSQQRAKNIASQIRSGNVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLVKAVVEDRWWPYIQTKHPKPLTYPVADNAFEFQMSLVEAMYGLNIWDQLKALVNVLKMLSEQNTSAKDNSAIGDESKRAD 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41960692 41970190 + Sed0015207.1 Sed04g3105 711708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3105 603 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 55 528 - -
Sed04g3105 603 FunFam aldehyde dehydrogenase 22A1 65 317 - -
Sed04g3105 603 Coils Coil 572 592 - -
Sed04g3105 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620(InterPro)
Sed04g3105 603 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491(InterPro)
Sed04g3105 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491(InterPro)
Sed04g3105 603 CDD ALDH_F15-22 69 531 - -
Sed04g3105 603 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491(InterPro)
Sed04g3105 603 FunFam Aldehyde dehydrogenase A 301 495 - -
Sed04g3105 603 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3105 Sed-Chr4:41960692 Sed08g0168 Sed-Chr8:923304 2.30E-59 dispersed
Sed04g3105 Sed-Chr4:41960692 Sed04g3106 Sed-Chr4:41960692 7.30E-308 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3105 - - - 0.0