Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3106 ATGAAATACTTGGGCTTTTTTCCTGCATTGTCGCGAGAAGAGGTCAAGGAGCGTGTTGCTTCAGCCAGGAAAGCACAGACAGAATGGGCCAAAAGTAGCTTCAAGCAAAGGCGTTTGTTTTTACGGATACTTTTGAAGTATATAATTGAACATCAAGAGCTTATTTGCGAGATCTCCTCCCGTGACACTGGGAAAACAATAGTGGATGCTAATATGGGAGAAATAATGGCGACATGTGAAAAGATTACTTGGCTTCTCTCAGAGGGTGAGAAATGGATGAAGCCTGAGAGTCGATCATGTGGAAGGGCAACCTTTCACAAGAAAGCCCGCGTAGAATTTCATCCCCTTGGAGTTATTGGGGCAATAGTCCCATGGAACTATCCATTCCATAACCTTTTCAATCCAGTGCTTGCAGCAGTCTTTGCTGGAAATGGCATTATAGTTAAGGTCTCAGAAAATGCAAGTTGGTCAGGATGCTTCTACATTAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGTTTGGTCGATGTCATAACAGGGTTTGCTGAAACAGGGGAAGCACTAGTATCTTCAGTAGACAAAATGATATTTGTTGGATCTACGGGTGTGGGTAGAATGATTATGAAAACTGCTGCTGACACACTTATTCCGGTTACTCTTGAGCTGGGTGGAAAGGACGCTTTTATTGTGTGTGAGGATGTAGATTTGGATCACGTTGTAAACGTTGCTCTCAGGGCATCTATTACATCAAGTGGACATAACTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAACATTTATTCGTCGTTTGTGGATAAAATATCTGGACGTATAAAAGCTATAACAGTTGGTCCTCCGTTAGCCGGTAAATATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTTGTAAATGAGGCCTTAGACAGTGGGGCAAAAGTTGTTGCTCGTGGAACTTTTGGACATTTGCCAGAAGGTGCCGTGGATCAATATTTCCCACCTACTGTTATTGTTGATGTCAACCATACCATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATCCTGCCTATAATGAAGTTCAGTACGGACGATGAGGCGGTGAAGCTTGCAAATGATTCAAGATTTGGGCTTGGCTGTTCTGTGTTTTCTGGCAGTCAGCAGCGTGCCAAGAATATCGCTTCGCAGATACGTTCTGGAAATGTTGCAATTAACGACTTTGCCACAAATTATTTGTGTCAGTCCTTGCCATTCGGTGGCGTAAAAGAGAGTGGATTTGGTCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTTGTCAAAGCTGTTGTTGAGGATAGGTGGTGGCCATACATTCAAACCAAGCATCCAAAGCCTCTTACGTATCCTGTTGCAGATAACGCATTCGAGTTTCAAATGTCACTTGTTGAAGCTATGTACGGCCTCAACATATGGGATCAATTAAAAGCATTGGTCAATGTTCTGAAGATGCTGTCCGAGCAGAACACTTCGGCTAAAGATAACTCTGCCATTGGCGATGAAAGTAAGAGAGCTGATTGA 1593 43.63 MKYLGFFPALSREEVKERVASARKAQTEWAKSSFKQRRLFLRILLKYIIEHQELICEISSRDTGKTIVDANMGEIMATCEKITWLLSEGEKWMKPESRSCGRATFHKKARVEFHPLGVIGAIVPWNYPFHNLFNPVLAAVFAGNGIIVKVSENASWSGCFYIRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKTAADTLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASITSSGHNCTGAERFYVHKNIYSSFVDKISGRIKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNEALDSGAKVVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVKLANDSRFGLGCSVFSGSQQRAKNIASQIRSGNVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLVKAVVEDRWWPYIQTKHPKPLTYPVADNAFEFQMSLVEAMYGLNIWDQLKALVNVLKMLSEQNTSAKDNSAIGDESKRAD 530
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 41960692 41970190 + Sed0015207.2 Sed04g3106 711709
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3106 530 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 9 455 - -
Sed04g3106 530 PIRSF ALDH 7 498 IPR012394 GO:0006081(InterPro)
Sed04g3106 530 FunFam Aldehyde dehydrogenase A 228 422 - -
Sed04g3106 530 FunFam aldehyde dehydrogenase 22A1 1 244 - -
Sed04g3106 530 CDD ALDH_F15-22 1 458 - -
Sed04g3106 530 Coils Coil 499 519 - -
Sed04g3106 530 Pfam Aldehyde dehydrogenase family 4 454 IPR015590 GO:0016491(InterPro)
Sed04g3106 530 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 224 231 IPR029510 GO:0016491(InterPro)
Sed04g3106 530 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 232 427 IPR016163 GO:0016620(InterPro)
Sed04g3106 530 SUPERFAMILY ALDH-like 3 456 IPR016161 GO:0016491(InterPro)
Sed04g3106 530 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 4 452 IPR016162 GO:0016491(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3106 Sed-Chr4:41960692 Sed08g0168 Sed-Chr8:923304 3.20E-57 dispersed
Sed04g3105 Sed-Chr4:41960692 Sed04g3106 Sed-Chr4:41960692 7.30E-308 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3106 - - - 0.0