Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3135 ATGGCCGCCCTCTTGTTTCTTCTTCCCTTCATTTCAAATTCAATCTTCTTTATAATGTCAGTATCCATTTCCCAGCATATCCCAAATGCAAAAATGGCGAAACCTTTTCTAAAATCCGCCGCTTCAACGCCTCTGTTTCTCTTCCTCTTCTTTTCCCCATCTCTCGCCGTCGATTTCCTAACCCCCACTCAGAATCTCACCGACGGCGAATCATTAGTCTCGGAAAAAGGGGTTTTCGAACTGGGTTTCTTCGCCCCCGGAAACTCCACGAATCGGTACTTGGGAATCTGGTACAAATCCATTCCCATTCGCACAATCGTTTGGGTCGCGAACAGAGAAAAACCCATCAACGATTCCACCGCCGTTTTCAAAATCAACACCACCACATACGGCCCCGTTCTCCTCCACAACGACGCCGTTCTCTGGTCTTCCGAATCGCTCCATCGAAATCGAAACGGGAATCTCAAACTCCAGCTTCTGGACAACGGAAACCTAGTTCTGAAAGACGCGAAAACACAGGAAATTTCATGGCAGAGCTTCGATTACCCAACGGACACATTACTCCCCGGAATGAAACTCGGGTGGGATTTCAAAAACGGAATCCAACGCCGTCTATCGGCGTGGAAAAACCCCAACGACCCATCTCCGGGGAGTCTAACATTCGAAATGTTGAAAACCAACTTCCCGGAACCGGTGATGTGGAACGGCTCGACGGAGTTCATGAGAAGCGGGCCGTGGAACGGGGTTCTATTCAGCGCAAAACCCACAACGGCGTTACGGATCCTAGTCTACAACTACACAAACAACAAAACAGAGCTCACGTACAGCTACAACCTCATAAACTCCTCCCTCGTCGGAAGAATGGTGCTGAACCAAACGCTATTCCGGCGAGAGGCTCTGCTCTGGTCGGAAAAAGAGCAAAGCTGGAAACTCTACGCGACAATGCCGAGAGATTACTGCGACACGTACGGGTTATGCGGGGCGTTTGGGAGCTGCAACATTGAGATGATGCCGGCGTGCCAGTGTTTGGATGGGTTTCATCCGAAGGATCAAGAGAAGTGGAATTTGATGGATTATACAGATGGGTGCGTGAGGAATGGGGCGATTAACTGTTCGGTTGACGCAGTCGGGTTCGAGACGGTGCCGGGGCTGAAGCTGCCGGACACGAAGGTGTCTTGGGTGAATGAGAGTATGGATTTGAGTGAGTGTAGAGAGAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCGAACTCGGATGTGAGGGGATCGGGGAGTGGGTGTGTGATTTGGGTTGGGGATCTTGTGGATATCAAAGTTGTTCGTGGTGGCGGGCAGGATTTGTTTGTCAAGAGGCTCGCTTCTGAATTGGAGACGAAGAGGAGCGGGGTTATCGTCGGCGTTGTCGCCGGAGTTGCGGGTGTTGTGATTCTTGGGTTGGTTTTGGTTGGGCTTTGCATTATCCGAATTCGGAGTAGAAGAAACCTCCAAGTTGACCTTGAAGGACAAGCTGAAGACTTGGAGCTCCCATTATTCGACTTAACAACCATATCTAATGCCACGGATAATTTTTCGAACTCCAACAAGCTCGGAGAAGGTGGTTTTGGTGCAGTCTTTCGGGGTAGATTTGCAGATGGGCAAGAAATTGCGGTAAAGAGACTTTCTAGCTATTCGAGACAAGGGCCCGACGAGTTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATCGAAATCTTGTAAAACTCTTGGGTTGTTGCATCCAAGGGGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTTCTTCCTATTTGATCCTACTAAAAGAAAGTTTTTAGATTGGTCTAAACGATTCAATATCATTTGTGGAGTAGCTCGAGGAATTCTTTATCTTCATCAAGATTCGAGATTAAGAATTATTCATAGAGATTTGAAAGCAAGCAATGTCTTGCTTGACGCTGATATGAATCCAAAAATCTCAGATTTTGGAATGGCCAGAACATTTGGAGGAGATCAAACTGAAGGAAATACCAGGAGAGTTGTAGGAACATATGGCTACATGGCACCCGAATATGCGATCGATGGACAATTTTCCATTAAATCAGATGTCTTCAGTTTTGGTATTTTGCTACTGGAGATCATATGTGGAGAAAAGAATAGAGGGTTTTACCGTCCCAATCACGCTTTCAACCTTATCGGACATGCGTGGAAGTTGTGGAATGAAGGAAAGCCTTTAGAGTTGATTGATTCAACCATAGGAGACTCCTATTCTCTATCTGAAGTGGTTAGATGCATTCATGTTAGCCTTTTGTGCTTACAACAACTCCCTGAAGATAGACCAACTATGCCCAATGTGGTTCTAATGCTAAGTAGTGAAAGTGCTTTGCCTCAACCAAAACAACCAGGATTCTACATGGAAAGAGATTCTCTTGAAGGAGATTCTCTTTTGGCCAAGAATGAATCTTCCACTACAAATGAGTTAACTATTTCGCTTATGGAGGCTAGATAA 2526 46.04 MAALLFLLPFISNSIFFIMSVSISQHIPNAKMAKPFLKSAASTPLFLFLFFSPSLAVDFLTPTQNLTDGESLVSEKGVFELGFFAPGNSTNRYLGIWYKSIPIRTIVWVANREKPINDSTAVFKINTTTYGPVLLHNDAVLWSSESLHRNRNGNLKLQLLDNGNLVLKDAKTQEISWQSFDYPTDTLLPGMKLGWDFKNGIQRRLSAWKNPNDPSPGSLTFEMLKTNFPEPVMWNGSTEFMRSGPWNGVLFSAKPTTALRILVYNYTNNKTELTYSYNLINSSLVGRMVLNQTLFRREALLWSEKEQSWKLYATMPRDYCDTYGLCGAFGSCNIEMMPACQCLDGFHPKDQEKWNLMDYTDGCVRNGAINCSVDAVGFETVPGLKLPDTKVSWVNESMDLSECREKCLRNCSCVAFANSDVRGSGSGCVIWVGDLVDIKVVRGGGQDLFVKRLASELETKRSGVIVGVVAGVAGVVILGLVLVGLCIIRIRSRRNLQVDLEGQAEDLELPLFDLTTISNATDNFSNSNKLGEGGFGAVFRGRFADGQEIAVKRLSSYSRQGPDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDFFLFDPTKRKFLDWSKRFNIICGVARGILYLHQDSRLRIIHRDLKASNVLLDADMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIICGEKNRGFYRPNHAFNLIGHAWKLWNEGKPLELIDSTIGDSYSLSEVVRCIHVSLLCLQQLPEDRPTMPNVVLMLSSESALPQPKQPGFYMERDSLEGDSLLAKNESSTTNELTISLMEAR 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42146214 42151791 - Sed0015237.1 Sed04g3135 711738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3135 841 Pfam PAN-like domain 371 438 IPR003609 -
Sed04g3135 841 ProSiteProfiles Protein kinase domain profile. 524 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3135 841 ProSiteProfiles Bulb-type lectin domain profile. 57 180 IPR001480 -
Sed04g3135 841 ProSiteProfiles PAN/Apple domain profile. 371 453 IPR003609 -
Sed04g3135 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Sed04g3135 841 Gene3D Hepatocyte Growth Factor 372 452 - -
Sed04g3135 841 Pfam D-mannose binding lectin 105 209 IPR001480 -
Sed04g3135 841 Pfam Domain of unknown function (DUF3403) 796 841 IPR021820 GO:0004674(InterPro)
Sed04g3135 841 CDD STKc_IRAK 530 795 - -
Sed04g3135 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 489 599 - -
Sed04g3135 841 Gene3D - 54 180 IPR036426 -
Sed04g3135 841 SMART serkin_6 524 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3135 841 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524(InterPro)
Sed04g3135 841 SMART ntp_6 373 452 IPR003609 -
Sed04g3135 841 Pfam Protein tyrosine and serine/threonine kinase 527 791 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3135 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3135 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 106 214 IPR036426 -
Sed04g3135 841 SMART blect_4 63 183 IPR001480 -
Sed04g3135 841 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 51 809 - -
Sed04g3135 841 Gene3D Phosphorylase Kinase; domain 1 488 599 - -
Sed04g3135 841 PIRSF SRK 31 841 IPR024171 GO:0004674(InterPro)
Sed04g3135 841 SUPERFAMILY Protein kinase-like (PK-like) 509 795 IPR011009 -
Sed04g3135 841 Gene3D Transferase(Phosphotransferase) domain 1 600 806 - -
Sed04g3135 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 54 180 - -
Sed04g3135 841 Pfam S-locus glycoprotein domain 242 349 IPR000858 GO:0048544(InterPro)
Sed04g3135 841 CDD B_lectin 66 183 IPR001480 -
Sed04g3135 841 CDD PAN_AP_plant 369 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2040 Sed-Chr1:15263826 Sed04g3135 Sed-Chr4:42146214 6.30E-185 dispersed
Sed01g3061 Sed-Chr1:36514893 Sed04g3135 Sed-Chr4:42146214 1.70E-137 dispersed
Sed04g3135 Sed-Chr4:42146214 Sed07g1909 Sed-Chr7:33131398 9.90E-255 dispersed
Sed04g3133 Sed-Chr4:42137069 Sed04g3135 Sed-Chr4:42146214 1.20E-215 proximal
Sed07g0805 Sed-Chr7:5926200 Sed04g3135 Sed-Chr4:42146214 1.40E-130 transposed
Sed13g1158 Sed-Chr13:14371475 Sed04g3135 Sed-Chr4:42146214 2.20E-223 transposed
Sed01g2043 Sed-Chr1:15282753 Sed04g3135 Sed-Chr4:42146214 5.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79073 PF07714 PK_Tyr_Ser-Thr 6.00E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3135 - - - 0.0