Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3144 ATGATGTTATCTGCATCGCCGACTGAAGTTCGGAGTTCACTTGAGGTAATGCTTGATTCTCTTAGACGAAGGGATGAGATTGAAAAGCCTAAAGACTGTCCCCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCTCCGGTGAGACGGGCTTTACCGGTCAATTTCAGGGTTAATGATGATGGTTCCTCAGGGTGTACTATTAATGGATTTAATGGAAGGGATGATGAAGTGAAAAAGGGGAGTGGTTTGGGTAGTTTTGCATTCAAGAGATTGAGTGGAGATCAAAAGGATGAATCTCCTTACATGGTAGCTTCAGAAAATGAGAATAGAGATCAAGTCAATGGCTCCAATGGTGCTTTGATGTCAAATATTCAATGGTCTCGCTATGAGGACAATATCAGATATTTTCTTCAGAAGAAACTTCGTGTTTGGTGTCAACCTCCTAATGGACTATGGGAGTTAGGAACCATACAGTCAAACGCCGGAGAGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTATTAAAGTTTCGATCGCAGATCTCTTACCTGCCAATCCAGATATAGTGGAGGGGGTTGATGATCTTGTACAACTTGGTTATTTAAACGAGCCTTCCGTTATTCACAATCTCCAGCAAAGATTTTCTCAGGATAAGATTTATAGTAATGCTGGGTCAGTTTTGGTTGCAGTCAATCCCTTGAAAGACACTAAGCAGTATGGAAATGAATTTATTACAGCTTATAGACAGAGACTCATAAACAACCCTCATGTTTATGCTACAGCAGATACTGCCTATTCTGAGATGATGAAAGATGAAGTTAATCAATCCATTATCATCAGTGGCGAAAGTGGAGCTGGGAAAACTGAGACAGCGAAAGTTGCACTAGAATACCTGACTGCTCTTGGTGGGGGCAGTGGCATAGTTGATAGAATCCCGCAGGCGAATGTTATACTCGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAATGGGGAAGATATGCGGTGCTGTAATCCAGACTTTTCTGCTGGAAAAGTCAAGAGCTGTTCAGCTGGTCAATGGTGAAAGATCATTCCATGTCTTCTATCAGCTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCCAGTGAGTACAATTACCTTAATCACACTGAATGCCTGGTTATTGGTGGCGAGGATGATGCTCGGAAATTTCAAATTCTTGTGGAAGCCCTAGATGTACTTAAGTTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTTCTGCAGTTTTGTGGATAGGGAACATTACCTTTCAAACAATTGGTAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCTAAGCTGATGGGCTGCAGTTCTAATGAGCTTAAATTATTTTTATCGACCCCCAAAGAGCAATCTGGCATGGATAGCGCTGCTAAAAAATTGACATTACGACAGGCAACTGATGCAAGAGATGCATTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAGGTCACTTAAACCAGGAAGGGAGCATTCTGGAAGATCCATAAATATCCTTGACATCTGCGGGTTCGAGTCATTTAAGAAAAATAGCTTCGAGCAGTTCTGTATCAACTATGCAAATGAGAGACTGCAGCAGCATTATATCCGGCATGTGTTCAAACTTCAGCAGGAGGACTTTGAATTTAACAAGGTTGATGGTACAAAAGTCAACTTGGAAGACAATCAAGATTGTTTAAATCTTATTGAGAAGAAACCGGTAGGAATTCTAGCTTTGTTGGACGAAGAGTTGACTTTTCCCAAGGCTACAGATCTGACATTTGCTAATAAACTTAAAAAACACTTCAAATCGCATCCTCGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTGTTCGCCACTATGCTGGAGAGGTTGTATACGACACAAATGGATTTTTGGAGAAGAATAGAGATCTGTTGCATTCAGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAGTTATTTGCCTCCAAACTGATTAACCATTCCCCCAAACCAACAGTTTCAGTGTGCTCTTCAGTAGTAGAATCCCCTGAACCAGGTGTTGGTTCCAAGTACAAGGCTCTACTATTTGACTTGTTTCGTAAATTGGAGAGCACCAACCATCACTTCATTTGTTGCACGAGACCAAACAGAAACCAAGTTTGTGGCGAATTTGAGGAGGACCTTGTCTTACAACAGCTAAGACACTATGGAATTTTGGAGGTTGCTAGGATTTCAAGATCTGGATATCCAATCAGAATGACGCACCAAGAATTTGCTGGAAGGTATGGATTCTTCCTTAAAGAAACGGGTGCATCTCGAGACCCATTGAGTACATCGATTGCTGTTCTGCAACTTTTTGACGTCCACCCCGAGATGTACCATGTTGGTTATACCAAATTATTTTTCCGAAATGGGCAGATTAGGGCATTGGAGGAAAGGAGGATGCAGGCCGTGCAAGGCATCCTGGTGGTTCAAAAGTACTTCCGCGGTTGGCACTCTCGTGACCGTTTCCATGAACTCAAGCAAGCTGCCACTATCTTACAATCATTTATTCGTGGCGAAAAGGCCAGAAGGGCATGTAGCGGTAAGGTGAAGAGGTTCTCATACGTTGTGTACGCTTCCAATGTTCCTAAAAAGATTTATGAACTGCAAGCAATCATACGAATACAATCCGTAATGCGTGGTTGGTTGGCTCGAAAGCAACTTAAGGGCATGGAGGATACGAAGAGGGGTTTACCTGATAATAGAAAATCTGAACCGAACACGGGCAGTAGACTTTCCGAGGATGCAGTTCAAGAACAAAGTCAAACCATGCCAACAATCCTGACCGACCTTCAAAAGAAGGTCCTCGAGGTAGAAGCAACCATAGAGAAAAGGGAAGAGGAAAATGCGGCATTGCGGGACCAAGTAAAGCAATTCGAGGCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCTATGGAGGATATGTGGCAAAAGCGGATGGAATCTTTGCAAGAGAGTCTTGCTGCTGCTAAAAGGCGTCTTGCTACTGAACATGTAGTCTATACACCTGGAAGATTTGATGCTGGTAACTCACCATATTATGATTCCGAAGATACGATATCCATGGGATCTCGAACTCCTGGTGCTACCACACCTTTGAAATTTTCAGGAATTTCTGAGGTTGGAGCAGGCCGAGAAATGAACGGCACTTTAGTTGCAGTGAACAATCTTGTAAGGGAATTTGAACATCGACGAAATGCATTTGATGATGATGCCAAAGCTTTAATGGAAGTCAAATCAGGTCAGGCACAGACAGGGGTTAACATAAATCTAGATGAAGAATACCGTAAAATTAAAGCCCGGTTCGAAACATGGAAAAAGGAATACAAGGCAAGATTAAGGGAAACTAAGACTAAGGTTCATAAGAATGGAGTGTTTGAAGTTGACAAAATTCGTCGAAAATGGTGGGGGAAGTTGAGCTCGAGAGCATGA 3624 42.44 MMLSASPTEVRSSLEVMLDSLRRRDEIEKPKDCPPALPSRPTSKARIPPVRRALPVNFRVNDDGSSGCTINGFNGRDDEVKKGSGLGSFAFKRLSGDQKDESPYMVASENENRDQVNGSNGALMSNIQWSRYEDNIRYFLQKKLRVWCQPPNGLWELGTIQSNAGEEASVMLSNKKVIKVSIADLLPANPDIVEGVDDLVQLGYLNEPSVIHNLQQRFSQDKIYSNAGSVLVAVNPLKDTKQYGNEFITAYRQRLINNPHVYATADTAYSEMMKDEVNQSIIISGESGAGKTETAKVALEYLTALGGGSGIVDRIPQANVILEAFGNAKTSRNNNASRFGKLIEILFSRMGKICGAVIQTFLLEKSRAVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVASEYNYLNHTECLVIGGEDDARKFQILVEALDVLKFTKEDQEHAFGLLSAVLWIGNITFQTIGSENHVEVMANEAVANAAKLMGCSSNELKLFLSTPKEQSGMDSAAKKLTLRQATDARDALAKFIYASLFDWLVEQINRSLKPGREHSGRSINILDICGFESFKKNSFEQFCINYANERLQQHYIRHVFKLQQEDFEFNKVDGTKVNLEDNQDCLNLIEKKPVGILALLDEELTFPKATDLTFANKLKKHFKSHPRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLFASKLINHSPKPTVSVCSSVVESPEPGVGSKYKALLFDLFRKLESTNHHFICCTRPNRNQVCGEFEEDLVLQQLRHYGILEVARISRSGYPIRMTHQEFAGRYGFFLKETGASRDPLSTSIAVLQLFDVHPEMYHVGYTKLFFRNGQIRALEERRMQAVQGILVVQKYFRGWHSRDRFHELKQAATILQSFIRGEKARRACSGKVKRFSYVVYASNVPKKIYELQAIIRIQSVMRGWLARKQLKGMEDTKRGLPDNRKSEPNTGSRLSEDAVQEQSQTMPTILTDLQKKVLEVEATIEKREEENAALRDQVKQFEARRLEYEAKMKSMEDMWQKRMESLQESLAAAKRRLATEHVVYTPGRFDAGNSPYYDSEDTISMGSRTPGATTPLKFSGISEVGAGREMNGTLVAVNNLVREFEHRRNAFDDDAKALMEVKSGQAQTGVNINLDEEYRKIKARFETWKKEYKARLRETKTKVHKNGVFEVDKIRRKWWGKLSSRA 1207
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 42237027 42246450 - Sed0010032.1 Sed04g3144 711747
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3144 1207 Coils Coil 1152 1172 - -
Sed04g3144 1207 Gene3D - 798 865 - -
Sed04g3144 1207 ProSiteProfiles IQ motif profile. 931 960 - -
Sed04g3144 1207 ProSiteProfiles IQ motif profile. 866 894 - -
Sed04g3144 1207 MobiDBLite consensus disorder prediction 956 984 - -
Sed04g3144 1207 Gene3D - 868 916 - -
Sed04g3144 1207 Pfam IQ calmodulin-binding motif 891 908 IPR000048 GO:0005515(InterPro)
Sed04g3144 1207 Pfam IQ calmodulin-binding motif 933 952 IPR000048 GO:0005515(InterPro)
Sed04g3144 1207 Gene3D - 564 754 - -
Sed04g3144 1207 SMART MYSc_2a 188 865 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 Gene3D Kinesin motor domain 193 797 IPR036961 -
Sed04g3144 1207 Coils Coil 991 1057 - -
Sed04g3144 1207 MobiDBLite consensus disorder prediction 966 984 - -
Sed04g3144 1207 Gene3D - 376 432 - -
Sed04g3144 1207 ProSiteProfiles IQ motif profile. 889 917 - -
Sed04g3144 1207 SMART iq_5 930 952 IPR000048 GO:0005515(InterPro)
Sed04g3144 1207 SMART iq_5 865 887 IPR000048 GO:0005515(InterPro)
Sed04g3144 1207 SMART iq_5 888 910 IPR000048 GO:0005515(InterPro)
Sed04g3144 1207 Gene3D - 923 1050 - -
Sed04g3144 1207 Gene3D Myosin VI head, motor domain, U50 subdomain 433 541 - -
Sed04g3144 1207 FunFam Myosin heavy chain 376 432 - -
Sed04g3144 1207 ProSiteProfiles Myosin motor domain profile. 194 864 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 PANTHER MYOSIN 145 1199 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Sed04g3144 1207 MobiDBLite consensus disorder prediction 25 46 - -
Sed04g3144 1207 Pfam Myosin head (motor domain) 196 852 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 141 190 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 908 IPR027417 -
Sed04g3144 1207 CDD MYSc_Myo8 208 852 IPR036022 -
Sed04g3144 1207 PRINTS Myosin heavy chain signature 320 347 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 PRINTS Myosin heavy chain signature 552 580 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 PRINTS Myosin heavy chain signature 278 303 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 PRINTS Myosin heavy chain signature 224 243 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed04g3144 1207 PRINTS Myosin heavy chain signature 605 633 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3144 Sed-Chr4:42237027 Sed07g2384 Sed-Chr7:39651943 8.80E-297 dispersed
Sed04g3144 Sed-Chr4:42237027 Sed07g2629 Sed-Chr7:41760282 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3144 K10357 - csv:101210624 1875.52