Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g3144 | ATGATGTTATCTGCATCGCCGACTGAAGTTCGGAGTTCACTTGAGGTAATGCTTGATTCTCTTAGACGAAGGGATGAGATTGAAAAGCCTAAAGACTGTCCCCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCTCCGGTGAGACGGGCTTTACCGGTCAATTTCAGGGTTAATGATGATGGTTCCTCAGGGTGTACTATTAATGGATTTAATGGAAGGGATGATGAAGTGAAAAAGGGGAGTGGTTTGGGTAGTTTTGCATTCAAGAGATTGAGTGGAGATCAAAAGGATGAATCTCCTTACATGGTAGCTTCAGAAAATGAGAATAGAGATCAAGTCAATGGCTCCAATGGTGCTTTGATGTCAAATATTCAATGGTCTCGCTATGAGGACAATATCAGATATTTTCTTCAGAAGAAACTTCGTGTTTGGTGTCAACCTCCTAATGGACTATGGGAGTTAGGAACCATACAGTCAAACGCCGGAGAGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTATTAAAGTTTCGATCGCAGATCTCTTACCTGCCAATCCAGATATAGTGGAGGGGGTTGATGATCTTGTACAACTTGGTTATTTAAACGAGCCTTCCGTTATTCACAATCTCCAGCAAAGATTTTCTCAGGATAAGATTTATAGTAATGCTGGGTCAGTTTTGGTTGCAGTCAATCCCTTGAAAGACACTAAGCAGTATGGAAATGAATTTATTACAGCTTATAGACAGAGACTCATAAACAACCCTCATGTTTATGCTACAGCAGATACTGCCTATTCTGAGATGATGAAAGATGAAGTTAATCAATCCATTATCATCAGTGGCGAAAGTGGAGCTGGGAAAACTGAGACAGCGAAAGTTGCACTAGAATACCTGACTGCTCTTGGTGGGGGCAGTGGCATAGTTGATAGAATCCCGCAGGCGAATGTTATACTCGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAATGGGGAAGATATGCGGTGCTGTAATCCAGACTTTTCTGCTGGAAAAGTCAAGAGCTGTTCAGCTGGTCAATGGTGAAAGATCATTCCATGTCTTCTATCAGCTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCCAGTGAGTACAATTACCTTAATCACACTGAATGCCTGGTTATTGGTGGCGAGGATGATGCTCGGAAATTTCAAATTCTTGTGGAAGCCCTAGATGTACTTAAGTTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTTCTGCAGTTTTGTGGATAGGGAACATTACCTTTCAAACAATTGGTAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCTAAGCTGATGGGCTGCAGTTCTAATGAGCTTAAATTATTTTTATCGACCCCCAAAGAGCAATCTGGCATGGATAGCGCTGCTAAAAAATTGACATTACGACAGGCAACTGATGCAAGAGATGCATTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAGGTCACTTAAACCAGGAAGGGAGCATTCTGGAAGATCCATAAATATCCTTGACATCTGCGGGTTCGAGTCATTTAAGAAAAATAGCTTCGAGCAGTTCTGTATCAACTATGCAAATGAGAGACTGCAGCAGCATTATATCCGGCATGTGTTCAAACTTCAGCAGGAGGACTTTGAATTTAACAAGGTTGATGGTACAAAAGTCAACTTGGAAGACAATCAAGATTGTTTAAATCTTATTGAGAAGAAACCGGTAGGAATTCTAGCTTTGTTGGACGAAGAGTTGACTTTTCCCAAGGCTACAGATCTGACATTTGCTAATAAACTTAAAAAACACTTCAAATCGCATCCTCGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTGTTCGCCACTATGCTGGAGAGGTTGTATACGACACAAATGGATTTTTGGAGAAGAATAGAGATCTGTTGCATTCAGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAGTTATTTGCCTCCAAACTGATTAACCATTCCCCCAAACCAACAGTTTCAGTGTGCTCTTCAGTAGTAGAATCCCCTGAACCAGGTGTTGGTTCCAAGTACAAGGCTCTACTATTTGACTTGTTTCGTAAATTGGAGAGCACCAACCATCACTTCATTTGTTGCACGAGACCAAACAGAAACCAAGTTTGTGGCGAATTTGAGGAGGACCTTGTCTTACAACAGCTAAGACACTATGGAATTTTGGAGGTTGCTAGGATTTCAAGATCTGGATATCCAATCAGAATGACGCACCAAGAATTTGCTGGAAGGTATGGATTCTTCCTTAAAGAAACGGGTGCATCTCGAGACCCATTGAGTACATCGATTGCTGTTCTGCAACTTTTTGACGTCCACCCCGAGATGTACCATGTTGGTTATACCAAATTATTTTTCCGAAATGGGCAGATTAGGGCATTGGAGGAAAGGAGGATGCAGGCCGTGCAAGGCATCCTGGTGGTTCAAAAGTACTTCCGCGGTTGGCACTCTCGTGACCGTTTCCATGAACTCAAGCAAGCTGCCACTATCTTACAATCATTTATTCGTGGCGAAAAGGCCAGAAGGGCATGTAGCGGTAAGGTGAAGAGGTTCTCATACGTTGTGTACGCTTCCAATGTTCCTAAAAAGATTTATGAACTGCAAGCAATCATACGAATACAATCCGTAATGCGTGGTTGGTTGGCTCGAAAGCAACTTAAGGGCATGGAGGATACGAAGAGGGGTTTACCTGATAATAGAAAATCTGAACCGAACACGGGCAGTAGACTTTCCGAGGATGCAGTTCAAGAACAAAGTCAAACCATGCCAACAATCCTGACCGACCTTCAAAAGAAGGTCCTCGAGGTAGAAGCAACCATAGAGAAAAGGGAAGAGGAAAATGCGGCATTGCGGGACCAAGTAAAGCAATTCGAGGCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCTATGGAGGATATGTGGCAAAAGCGGATGGAATCTTTGCAAGAGAGTCTTGCTGCTGCTAAAAGGCGTCTTGCTACTGAACATGTAGTCTATACACCTGGAAGATTTGATGCTGGTAACTCACCATATTATGATTCCGAAGATACGATATCCATGGGATCTCGAACTCCTGGTGCTACCACACCTTTGAAATTTTCAGGAATTTCTGAGGTTGGAGCAGGCCGAGAAATGAACGGCACTTTAGTTGCAGTGAACAATCTTGTAAGGGAATTTGAACATCGACGAAATGCATTTGATGATGATGCCAAAGCTTTAATGGAAGTCAAATCAGGTCAGGCACAGACAGGGGTTAACATAAATCTAGATGAAGAATACCGTAAAATTAAAGCCCGGTTCGAAACATGGAAAAAGGAATACAAGGCAAGATTAAGGGAAACTAAGACTAAGGTTCATAAGAATGGAGTGTTTGAAGTTGACAAAATTCGTCGAAAATGGTGGGGGAAGTTGAGCTCGAGAGCATGA | 3624 | 42.44 | MMLSASPTEVRSSLEVMLDSLRRRDEIEKPKDCPPALPSRPTSKARIPPVRRALPVNFRVNDDGSSGCTINGFNGRDDEVKKGSGLGSFAFKRLSGDQKDESPYMVASENENRDQVNGSNGALMSNIQWSRYEDNIRYFLQKKLRVWCQPPNGLWELGTIQSNAGEEASVMLSNKKVIKVSIADLLPANPDIVEGVDDLVQLGYLNEPSVIHNLQQRFSQDKIYSNAGSVLVAVNPLKDTKQYGNEFITAYRQRLINNPHVYATADTAYSEMMKDEVNQSIIISGESGAGKTETAKVALEYLTALGGGSGIVDRIPQANVILEAFGNAKTSRNNNASRFGKLIEILFSRMGKICGAVIQTFLLEKSRAVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVASEYNYLNHTECLVIGGEDDARKFQILVEALDVLKFTKEDQEHAFGLLSAVLWIGNITFQTIGSENHVEVMANEAVANAAKLMGCSSNELKLFLSTPKEQSGMDSAAKKLTLRQATDARDALAKFIYASLFDWLVEQINRSLKPGREHSGRSINILDICGFESFKKNSFEQFCINYANERLQQHYIRHVFKLQQEDFEFNKVDGTKVNLEDNQDCLNLIEKKPVGILALLDEELTFPKATDLTFANKLKKHFKSHPRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLFASKLINHSPKPTVSVCSSVVESPEPGVGSKYKALLFDLFRKLESTNHHFICCTRPNRNQVCGEFEEDLVLQQLRHYGILEVARISRSGYPIRMTHQEFAGRYGFFLKETGASRDPLSTSIAVLQLFDVHPEMYHVGYTKLFFRNGQIRALEERRMQAVQGILVVQKYFRGWHSRDRFHELKQAATILQSFIRGEKARRACSGKVKRFSYVVYASNVPKKIYELQAIIRIQSVMRGWLARKQLKGMEDTKRGLPDNRKSEPNTGSRLSEDAVQEQSQTMPTILTDLQKKVLEVEATIEKREEENAALRDQVKQFEARRLEYEAKMKSMEDMWQKRMESLQESLAAAKRRLATEHVVYTPGRFDAGNSPYYDSEDTISMGSRTPGATTPLKFSGISEVGAGREMNGTLVAVNNLVREFEHRRNAFDDDAKALMEVKSGQAQTGVNINLDEEYRKIKARFETWKKEYKARLRETKTKVHKNGVFEVDKIRRKWWGKLSSRA | 1207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 42237027 | 42246450 | - | Sed0010032.1 | Sed04g3144 | 711747 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g3144 | 1207 | Coils | Coil | 1152 | 1172 | - | - | |
| Sed04g3144 | 1207 | Gene3D | - | 798 | 865 | - | - | |
| Sed04g3144 | 1207 | ProSiteProfiles | IQ motif profile. | 931 | 960 | - | - | |
| Sed04g3144 | 1207 | ProSiteProfiles | IQ motif profile. | 866 | 894 | - | - | |
| Sed04g3144 | 1207 | MobiDBLite | consensus disorder prediction | 956 | 984 | - | - | |
| Sed04g3144 | 1207 | Gene3D | - | 868 | 916 | - | - | |
| Sed04g3144 | 1207 | Pfam | IQ calmodulin-binding motif | 891 | 908 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g3144 | 1207 | Pfam | IQ calmodulin-binding motif | 933 | 952 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g3144 | 1207 | Gene3D | - | 564 | 754 | - | - | |
| Sed04g3144 | 1207 | SMART | MYSc_2a | 188 | 865 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | Gene3D | Kinesin motor domain | 193 | 797 | IPR036961 | - | |
| Sed04g3144 | 1207 | Coils | Coil | 991 | 1057 | - | - | |
| Sed04g3144 | 1207 | MobiDBLite | consensus disorder prediction | 966 | 984 | - | - | |
| Sed04g3144 | 1207 | Gene3D | - | 376 | 432 | - | - | |
| Sed04g3144 | 1207 | ProSiteProfiles | IQ motif profile. | 889 | 917 | - | - | |
| Sed04g3144 | 1207 | SMART | iq_5 | 930 | 952 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g3144 | 1207 | SMART | iq_5 | 865 | 887 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g3144 | 1207 | SMART | iq_5 | 888 | 910 | IPR000048 | GO:0005515(InterPro) | |
| Sed04g3144 | 1207 | Gene3D | - | 923 | 1050 | - | - | |
| Sed04g3144 | 1207 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 433 | 541 | - | - | |
| Sed04g3144 | 1207 | FunFam | Myosin heavy chain | 376 | 432 | - | - | |
| Sed04g3144 | 1207 | ProSiteProfiles | Myosin motor domain profile. | 194 | 864 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | PANTHER | MYOSIN | 145 | 1199 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed04g3144 | 1207 | MobiDBLite | consensus disorder prediction | 25 | 46 | - | - | |
| Sed04g3144 | 1207 | Pfam | Myosin head (motor domain) | 196 | 852 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 141 | 190 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 168 | 908 | IPR027417 | - | |
| Sed04g3144 | 1207 | CDD | MYSc_Myo8 | 208 | 852 | IPR036022 | - | |
| Sed04g3144 | 1207 | PRINTS | Myosin heavy chain signature | 320 | 347 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | PRINTS | Myosin heavy chain signature | 552 | 580 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | PRINTS | Myosin heavy chain signature | 278 | 303 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | PRINTS | Myosin heavy chain signature | 224 | 243 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed04g3144 | 1207 | PRINTS | Myosin heavy chain signature | 605 | 633 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3144 | Sed-Chr4:42237027 | Sed07g2384 | Sed-Chr7:39651943 | 8.80E-297 | dispersed | |
| Sed04g3144 | Sed-Chr4:42237027 | Sed07g2629 | Sed-Chr7:41760282 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g3144 | K10357 | - | csv:101210624 | 1875.52 |