Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3151 ATGGTGAAAATGGAGGTTGTGTTCTTGGCTCTGGCTTTTTTCATGTGTGTTGGATCTTTTGCCTCTTTTACTCCCATTGATAATTATTTGATAGCCTGTGGTTCTTCCCAAAATATTACATTTCAAGGAAGAACTTTCGTTCCTGATTCTGGAAATTCATTGCCCTCCCATGATGGTGGGAGCTCTGTTGTTGTTGGTAGTTCTAAGGATACTGTTATTGCTCAATCTCCAATCTATCAATCTGCTCGGGTTTTCACCGGCATTTCTTCGTATAGATTTGGAATCAAGCAACAGGGTCGGCATTGGATTCGGTTGTATTTTTATCCTGTTCCGAAGTCGGGGCGAGATCTGGCATCGGCGTCGATTACTGTTGTTACTGATAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTTGGATTCCTTGACCATTACTTTTATACCATCTAATGGTTCAGTTTCGTTTGTTAACGGGATCGAAGTTGTCTCGGTGCCTGATCAGCTGCTGCCTGACCAAGCATTGGCTTTGAATCCGTCTGCTCCTTTTAGCGGTATCTCGGAACTTGCTCTCGAAACTGTTTACCGGTTGAACATGGGGGGTCCTTTACTCACTTCGCAAAATGATACACTCGGAAGGACTTGGGAGAATGATATGAAATACCTTCATGTCAACAGTTCAGCAGTGAATGTTTCTGCCAGCCCGAGTAGCATAAAATATCATGCTGGTGTTACACCCGAGACTGCACCGAATTGGGTTTATTCTACTGCCGATGCCATGGGAGACTCAAATGTACCAAATGTGAGCTTCAACTTGACCTGGGTATTTTCTGTTGAGCCTAATTTTCAATACTTTGTTCGAGTGCATTTTTGTGATATAATGAGCAAGGCTCTCAATACCCTGATATTCAATCTCTACATCAATTCTGATAATGCTTTGGGAGGCTTTGATCTGTCATCGTTAACCGGTGACTTGGGCGTGCCATACTACAAAGATTTCATTTCCAATTCAGTAGATTCAGCAGATTCAACTACTTTGACAGTTAGTGTCGGTCCAGATACGGTGACAGACATCGTCAATGCAACCATGAATGGCTTGGAGATTATGAAGATTAGCAATCAAGCCAAGAGCTTGGATGGAACTTTGTCTGTTGAAAGTATTTTCCTAAATGCGCCCTCGAAGAAGAACAATATAGTAATCATTGTTGGTTCTGTCTTGGGAGCTGTGGTTGGCCTTGCTTTGCTCGTCTTGTGTTATTGCTGCTTTGTAGGTCGCAAGTCGAAGACTACTCAACCAGCACACTCATGGCTGCCTTTGCCATTGTATGGAAACTCTCTAACCATGTCAAAAGGGTCAACAATTTCTCAAAAGAGTGGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGCCTTGGCAGAATCTTTACATTTCAGGAAATTCTTCATGCTACCAACAAATTCGATGAAAACCTTCTTCTTGGAGTTGGTGGTTTTGGTCGGGTTTACACGGGAACACTTGAAGATGGTCTGAAAGTTGCTGTTAAAAGAGGTAACCCCAAATCGGCACAAGGTCTCGCTGAGTTTCGAACTGAAATAGAAATGTTATCGAAGCTTCGACATCGTCATCTGGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTATATGAATATATGGCAAATGGTCCTCTCAGGAGTCATTTGTATGGAACAGATCTACCACCATTGTCGTGGAAGCAACGACTTGATATTTGCATCGGTGCTGCGAGAGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATCATACACCGGGATGTTAAAACAACAAATATTCTCTTGGACGAGAATTTCGTTGCTAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAAGGTAGTTTTGGTTACCTTGATCCTGAATACTTCAGGAGACAACAGCTCACTGAGAAGTCGGACGTATATTCATTCGGGGTCGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCCGTTCTGCCCCGAGAACAGGTCAATATAGCCGAATGGGCAACGACCTGGCAGAAAAAGGGCATGCTGGATCATATCATGGACCCGAATCTGGTTGGTAAAGTTAATCCAGGATCACTTAAGAAGTTTGGCGAAACAGCTGAGAAGTGCCTGGCTGAGTATGGGGTTGACAGGCCGTCTATGGGAGACGTTCTGTGGAACCTGGAATACGCTCTTCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAATCACATACCTACAATCCAACTGACCCCGCTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCTGACACCAACGATGATGCAGAAGATGTCGCAACAAGTGCAGTGTTTTCGCAGCTCGTAAATCCTCGCGGAAGATGA 2535 43.71 MVKMEVVFLALAFFMCVGSFASFTPIDNYLIACGSSQNITFQGRTFVPDSGNSLPSHDGGSSVVVGSSKDTVIAQSPIYQSARVFTGISSYRFGIKQQGRHWIRLYFYPVPKSGRDLASASITVVTDKFVLLNNFTFKNYNGSFMFKEYAINVTLDSLTITFIPSNGSVSFVNGIEVVSVPDQLLPDQALALNPSAPFSGISELALETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSASPSSIKYHAGVTPETAPNWVYSTADAMGDSNVPNVSFNLTWVFSVEPNFQYFVRVHFCDIMSKALNTLIFNLYINSDNALGGFDLSSLTGDLGVPYYKDFISNSVDSADSTTLTVSVGPDTVTDIVNATMNGLEIMKISNQAKSLDGTLSVESIFLNAPSKKNNIVIIVGSVLGAVVGLALLVLCYCCFVGRKSKTTQPAHSWLPLPLYGNSLTMSKGSTISQKSGGTASFISLASSSLGRIFTFQEILHATNKFDENLLLGVGGFGRVYTGTLEDGLKVAVKRGNPKSAQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWATTWQKKGMLDHIMDPNLVGKVNPGSLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSDTNDDAEDVATSAVFSQLVNPRGR 844
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 42291401 42295779 - Sed0027359.1 Sed04g3151 711754
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3151 844 Pfam Protein tyrosine and serine/threonine kinase 509 700 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3151 844 FunFam receptor-like protein kinase FERONIA 466 578 - -
Sed04g3151 844 FunFam Receptor-like protein kinase FERONIA 579 795 - -
Sed04g3151 844 ProSiteProfiles Protein kinase domain profile. 503 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3151 844 FunFam Receptor-like protein kinase FERONIA 205 388 - -
Sed04g3151 844 SMART serkin_6 503 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3151 844 Gene3D Phosphorylase Kinase; domain 1 465 578 - -
Sed04g3151 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3151 844 Pfam Malectin-like domain 31 385 IPR024788 -
Sed04g3151 844 Gene3D - 204 388 - -
Sed04g3151 844 Gene3D - 28 180 - -
Sed04g3151 844 PANTHER OS07G0166700 PROTEIN 491 780 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed04g3151 844 Gene3D Transferase(Phosphotransferase) domain 1 579 796 - -
Sed04g3151 844 FunFam Putative receptor-like protein kinase 28 181 - -
Sed04g3151 844 SUPERFAMILY Protein kinase-like (PK-like) 480 774 IPR011009 -
Sed04g3151 844 CDD STKc_IRAK 509 774 - -
Sed04g3151 844 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3151 Sed-Chr4:42291401 Sed08g0239 Sed-Chr8:1358785 1.30E-233 dispersed
Sed04g0254 Sed-Chr4:1900605 Sed04g3151 Sed-Chr4:42291401 1.50E-162 transposed
Sed04g3151 Sed-Chr4:42291401 Sed07g2623 Sed-Chr7:41685629 0.00E+00 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79074 PF12819 Malectin_like 1.20E-36 CL0202 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3151 - - - 0.0