Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3151 | ATGGTGAAAATGGAGGTTGTGTTCTTGGCTCTGGCTTTTTTCATGTGTGTTGGATCTTTTGCCTCTTTTACTCCCATTGATAATTATTTGATAGCCTGTGGTTCTTCCCAAAATATTACATTTCAAGGAAGAACTTTCGTTCCTGATTCTGGAAATTCATTGCCCTCCCATGATGGTGGGAGCTCTGTTGTTGTTGGTAGTTCTAAGGATACTGTTATTGCTCAATCTCCAATCTATCAATCTGCTCGGGTTTTCACCGGCATTTCTTCGTATAGATTTGGAATCAAGCAACAGGGTCGGCATTGGATTCGGTTGTATTTTTATCCTGTTCCGAAGTCGGGGCGAGATCTGGCATCGGCGTCGATTACTGTTGTTACTGATAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTTGGATTCCTTGACCATTACTTTTATACCATCTAATGGTTCAGTTTCGTTTGTTAACGGGATCGAAGTTGTCTCGGTGCCTGATCAGCTGCTGCCTGACCAAGCATTGGCTTTGAATCCGTCTGCTCCTTTTAGCGGTATCTCGGAACTTGCTCTCGAAACTGTTTACCGGTTGAACATGGGGGGTCCTTTACTCACTTCGCAAAATGATACACTCGGAAGGACTTGGGAGAATGATATGAAATACCTTCATGTCAACAGTTCAGCAGTGAATGTTTCTGCCAGCCCGAGTAGCATAAAATATCATGCTGGTGTTACACCCGAGACTGCACCGAATTGGGTTTATTCTACTGCCGATGCCATGGGAGACTCAAATGTACCAAATGTGAGCTTCAACTTGACCTGGGTATTTTCTGTTGAGCCTAATTTTCAATACTTTGTTCGAGTGCATTTTTGTGATATAATGAGCAAGGCTCTCAATACCCTGATATTCAATCTCTACATCAATTCTGATAATGCTTTGGGAGGCTTTGATCTGTCATCGTTAACCGGTGACTTGGGCGTGCCATACTACAAAGATTTCATTTCCAATTCAGTAGATTCAGCAGATTCAACTACTTTGACAGTTAGTGTCGGTCCAGATACGGTGACAGACATCGTCAATGCAACCATGAATGGCTTGGAGATTATGAAGATTAGCAATCAAGCCAAGAGCTTGGATGGAACTTTGTCTGTTGAAAGTATTTTCCTAAATGCGCCCTCGAAGAAGAACAATATAGTAATCATTGTTGGTTCTGTCTTGGGAGCTGTGGTTGGCCTTGCTTTGCTCGTCTTGTGTTATTGCTGCTTTGTAGGTCGCAAGTCGAAGACTACTCAACCAGCACACTCATGGCTGCCTTTGCCATTGTATGGAAACTCTCTAACCATGTCAAAAGGGTCAACAATTTCTCAAAAGAGTGGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGCCTTGGCAGAATCTTTACATTTCAGGAAATTCTTCATGCTACCAACAAATTCGATGAAAACCTTCTTCTTGGAGTTGGTGGTTTTGGTCGGGTTTACACGGGAACACTTGAAGATGGTCTGAAAGTTGCTGTTAAAAGAGGTAACCCCAAATCGGCACAAGGTCTCGCTGAGTTTCGAACTGAAATAGAAATGTTATCGAAGCTTCGACATCGTCATCTGGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTATATGAATATATGGCAAATGGTCCTCTCAGGAGTCATTTGTATGGAACAGATCTACCACCATTGTCGTGGAAGCAACGACTTGATATTTGCATCGGTGCTGCGAGAGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATCATACACCGGGATGTTAAAACAACAAATATTCTCTTGGACGAGAATTTCGTTGCTAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAAGGTAGTTTTGGTTACCTTGATCCTGAATACTTCAGGAGACAACAGCTCACTGAGAAGTCGGACGTATATTCATTCGGGGTCGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCCGTTCTGCCCCGAGAACAGGTCAATATAGCCGAATGGGCAACGACCTGGCAGAAAAAGGGCATGCTGGATCATATCATGGACCCGAATCTGGTTGGTAAAGTTAATCCAGGATCACTTAAGAAGTTTGGCGAAACAGCTGAGAAGTGCCTGGCTGAGTATGGGGTTGACAGGCCGTCTATGGGAGACGTTCTGTGGAACCTGGAATACGCTCTTCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAATCACATACCTACAATCCAACTGACCCCGCTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCTGACACCAACGATGATGCAGAAGATGTCGCAACAAGTGCAGTGTTTTCGCAGCTCGTAAATCCTCGCGGAAGATGA | 2535 | 43.71 | MVKMEVVFLALAFFMCVGSFASFTPIDNYLIACGSSQNITFQGRTFVPDSGNSLPSHDGGSSVVVGSSKDTVIAQSPIYQSARVFTGISSYRFGIKQQGRHWIRLYFYPVPKSGRDLASASITVVTDKFVLLNNFTFKNYNGSFMFKEYAINVTLDSLTITFIPSNGSVSFVNGIEVVSVPDQLLPDQALALNPSAPFSGISELALETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSASPSSIKYHAGVTPETAPNWVYSTADAMGDSNVPNVSFNLTWVFSVEPNFQYFVRVHFCDIMSKALNTLIFNLYINSDNALGGFDLSSLTGDLGVPYYKDFISNSVDSADSTTLTVSVGPDTVTDIVNATMNGLEIMKISNQAKSLDGTLSVESIFLNAPSKKNNIVIIVGSVLGAVVGLALLVLCYCCFVGRKSKTTQPAHSWLPLPLYGNSLTMSKGSTISQKSGGTASFISLASSSLGRIFTFQEILHATNKFDENLLLGVGGFGRVYTGTLEDGLKVAVKRGNPKSAQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWATTWQKKGMLDHIMDPNLVGKVNPGSLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSDTNDDAEDVATSAVFSQLVNPRGR | 844 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 42291401 | 42295779 | - | Sed0027359.1 | Sed04g3151 | 711754 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3151 | 844 | Pfam | Protein tyrosine and serine/threonine kinase | 509 | 700 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g3151 | 844 | FunFam | receptor-like protein kinase FERONIA | 466 | 578 | - | - | |
Sed04g3151 | 844 | FunFam | Receptor-like protein kinase FERONIA | 579 | 795 | - | - | |
Sed04g3151 | 844 | ProSiteProfiles | Protein kinase domain profile. | 503 | 776 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g3151 | 844 | FunFam | Receptor-like protein kinase FERONIA | 205 | 388 | - | - | |
Sed04g3151 | 844 | SMART | serkin_6 | 503 | 776 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g3151 | 844 | Gene3D | Phosphorylase Kinase; domain 1 | 465 | 578 | - | - | |
Sed04g3151 | 844 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 623 | 635 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g3151 | 844 | Pfam | Malectin-like domain | 31 | 385 | IPR024788 | - | |
Sed04g3151 | 844 | Gene3D | - | 204 | 388 | - | - | |
Sed04g3151 | 844 | Gene3D | - | 28 | 180 | - | - | |
Sed04g3151 | 844 | PANTHER | OS07G0166700 PROTEIN | 491 | 780 | IPR045272 | GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER) | |
Sed04g3151 | 844 | Gene3D | Transferase(Phosphotransferase) domain 1 | 579 | 796 | - | - | |
Sed04g3151 | 844 | FunFam | Putative receptor-like protein kinase | 28 | 181 | - | - | |
Sed04g3151 | 844 | SUPERFAMILY | Protein kinase-like (PK-like) | 480 | 774 | IPR011009 | - | |
Sed04g3151 | 844 | CDD | STKc_IRAK | 509 | 774 | - | - | |
Sed04g3151 | 844 | ProSitePatterns | Protein kinases ATP-binding region signature. | 509 | 531 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3151 | Sed-Chr4:42291401 | Sed08g0239 | Sed-Chr8:1358785 | 1.30E-233 | dispersed | |
Sed04g0254 | Sed-Chr4:1900605 | Sed04g3151 | Sed-Chr4:42291401 | 1.50E-162 | transposed | |
Sed04g3151 | Sed-Chr4:42291401 | Sed07g2623 | Sed-Chr7:41685629 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79074 | PF12819 | Malectin_like | 1.20E-36 | CL0202 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3151 | - | - | - | 0.0 |