Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3164 ATGACCACTAAAAGCCATCAATTTCTCTCTGTTCTTGTCGTCGTCGTCATCCTCTTTTCAGCTCAAACTTTTGCCCAAAATGAAGATGAAGAAATCAAAAGATCAGATTTTCCACACAATTTCTTTTTTGGAGCTGCCACCTCATCTTATCAGGTCGAAGGGGCTTATCTTGAAGATGGGAAAGGATTGAGCAATTGGGATGTTTTTTCCCATATTCCAGGAAATACCCAGAACAACGACACCGGAGATGTCGCCGACGATCACTACCACCGGTTTCTGGAAGATATTGAGTTGATGGGTTCAATGGGGATGAATGCTTATCGCTTTTCCATTTCCTGGACCAGAATTTTGCCAAAGGGAAGATTTGGTAAAGTCAACAAAAGAGGGGTCGCTTTCTACAACAAAATCCTTAATCATTTGTTGCTAAGAGGAATTGAGCCATTTGTGACAATTCACCATCACGACTTCCCTGCTGAACTGGACGAAAGATATGGCAGTTGGATGAGCTCTCAAATGCAGGAAGATTTTGTGTACCTTGCCAAAGTATGTTTCGAAGAATTTGGAGAAAAAGTGAAGCATTGGATCACTATAAACGAGCCAAATTTAGTAACATTGTTGGCTTATGTAAGGGGAGTTTACCCTCCAGCCCGCTGCTCGCCGCCGTTCGGAAACTGCTCCGCCGGCAACTCTGATGTCGAGCCTCTCATTGTCATGCACAACATGTTGCTCGCCCATGCCAAGGCCGTTCGCCTTTACCGCACCCATTTTCAAGTTAAACAAGGTGGGTCCATAGGAATTGTGATATTTGGGCACATGTATGAACCGCTAACAGACAACGAACTCGATAGACAAGCTGTGGACAGAGCCTTGATTTTCAACTTTGCTTGGGTGTATGATCCAATAATATACGGAGATTACCCAAAAGAAATGCGAGAAATTTTAGGAAATGAACTTCCAAGTTTCTCCGAAGAGGAGAAGAATATTATAAAGGAAAGCTCAGATTACCTTTGTGTGAACCATTATACCACACTTTATGCGCAAGATTGTTTACATTCTGCATGTTCCTACGGTGGAGATCGCCCGATCATGGGATTTCTCGCCACGACAGGCTACCGGAATGGCGTTTCTATTGGAGATCCGACAGGAGAAGAAAGATTTTTTGTTGTCCCAAGTGGCTTAGAAAAAACCATTAACTATATTAAAGAAAGGTATCCAAACAAGCCTATCTTGGTCACTGAAAATGGATACTCTGCCCCACCAGGTGATGGTCACAAAGTTGAGGACATAGTAAACGACACCAAACGAGTTGAATACCACAAAAACTACCTCGCTTCATTGGCTAGGGCAATCAGGAATGGGGCTGATGTGAGAGGGTATTTTGTATGGTCCTTAATGGACAACTTCGAATGGGTCGATGGGTACGACATAAGATTTGGGCTTTTGTATGTGGACTTTAAAACACTTGAGCGACGGCCCAAACTTTCGGCCCACTGGTTTTCTTCTTTCCTCGGCGGCCACCTTCATACAAAGGCATTTGATTTTGCCATGGATGCTTAA 1557 43.55 MTTKSHQFLSVLVVVVILFSAQTFAQNEDEEIKRSDFPHNFFFGAATSSYQVEGAYLEDGKGLSNWDVFSHIPGNTQNNDTGDVADDHYHRFLEDIELMGSMGMNAYRFSISWTRILPKGRFGKVNKRGVAFYNKILNHLLLRGIEPFVTIHHHDFPAELDERYGSWMSSQMQEDFVYLAKVCFEEFGEKVKHWITINEPNLVTLLAYVRGVYPPARCSPPFGNCSAGNSDVEPLIVMHNMLLAHAKAVRLYRTHFQVKQGGSIGIVIFGHMYEPLTDNELDRQAVDRALIFNFAWVYDPIIYGDYPKEMREILGNELPSFSEEEKNIIKESSDYLCVNHYTTLYAQDCLHSACSYGGDRPIMGFLATTGYRNGVSIGDPTGEERFFVVPSGLEKTINYIKERYPNKPILVTENGYSAPPGDGHKVEDIVNDTKRVEYHKNYLASLARAIRNGADVRGYFVWSLMDNFEWVDGYDIRFGLLYVDFKTLERRPKLSAHWFSSFLGGHLHTKAFDFAMDA 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42408656 42420572 + Sed0010700.1 Sed04g3164 711767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3164 518 PRINTS Glycosyl hydrolase family 1 signature 477 489 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed04g3164 518 PRINTS Glycosyl hydrolase family 1 signature 332 346 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed04g3164 518 PRINTS Glycosyl hydrolase family 1 signature 432 443 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed04g3164 518 PRINTS Glycosyl hydrolase family 1 signature 409 417 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed04g3164 518 PRINTS Glycosyl hydrolase family 1 signature 453 470 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed04g3164 518 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 41 55 IPR033132 -
Sed04g3164 518 FunFam Beta-glucosidase 12 22 505 - -
Sed04g3164 518 SUPERFAMILY (Trans)glycosidases 31 503 IPR017853 -
Sed04g3164 518 Gene3D Glycosidases 16 512 - -
Sed04g3164 518 PANTHER GLYCOSYL HYDROLASE 19 500 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)|GO:0008422(PANTHER)
Sed04g3164 518 Pfam Glycosyl hydrolase family 1 35 502 IPR001360 GO:0004553(InterPro)|GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3164 K05350 - - csv:101220587 853.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1460 Sed-Chr1:10703134 Sed04g3164 Sed-Chr4:42408656 1.10E-155 dispersed
Sed04g3164 Sed-Chr4:42408656 Sed08g2750 Sed-Chr8:39180187 4.30E-123 dispersed
Sed04g3164 Sed-Chr4:42408656 Sed12g1594 Sed-Chr12:26303961 3.60E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g267 . . . . . . . . . . . . . . Sed04g3164 . . Bhi09g02021 Tan01g4428 Cmetu04g2674 . . Mch11g1092 . . . . . . . . . . . . Lsi04g01303 Csa04g02366 Chy07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000954 1 8 1 1 1 0 1 3 0 4 2 4 1 4 4 0 0 1 1 3 3 4 1 2 1 9 2 1 2 2 67