Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3168 ATGGATCCTCGCACCCGTTTGGATCATGCTCTGTTTCAGCTCACTCCCACTCGAACGAGGTGTGAACTGGTTATCTCTGCTAATGGAGGTGCTACTGAGAAACTGGCATCTGGGCTTCTTCAGCCGTTTATTTCTCATCTCAAATGTGCGAAAGATCAGATTTCTAAAGGGGGTTATTCCATTACTCTTCGCCCTGTTGCTGGATCAAACGCTTCATGGTTCACCAAGGGTACTCTTCAGAGATTCGTGAGATTTGTAAGCTCGCCCGAGGTTCTTGAGAGATTTGTTACTACAGAAAAGGAGATTGTGCAGATCGAGGATTCTATGTCCATAGATGCAGAAGGAAACACGACAGGTGCTGATTGGAACTCGAAACGGTCTAGCCCAACACCGAGGGTGAAGGGTGATTCCGATGAAAATGTTGACGATGTTGAATCAAAGGAGAATCCGAAGATCCGCCTTCAACGTGTTCTAGAAACTCGAAAGGCTGTGCTACACAAAGAACAAGCAATGGCTTATGCCCGCGCATTAGTTGCAGGATATGAGCTGGATCATATTGATGATCTTATATCTTTTGCTGATGCTTTTGGAGCTTCACGTTTAAGGGAAGCATGTATAAACTTTATGGACTTATGCAAGCGAAAGAATGAAGATAAACTCTGGATAGACGAAATAGCAGCTATGCAGGCCTTCTCTCAGCCTGCATTTCCCTATTCAGAAACTTCCGGTATTGTTCTAGCCGGTGAAGACATCGAAACTAACATCAATGCTCAAGCACCAAGATCTGATTCGTCTGCAAGTCAAGGAAGTTTGGAAAACAATCAAGATGGTAGCCTTCCGAAATCAGCACAAATGTCGATGAATGGGAAAGCGCAAGTGCCAATGACATGGCCTAATCATCCTCAATATATGCACAACTTTCAAGGTCCTTTGTATCCTCCATATCAAGGATATCTTTTCCCCGGAATGCAGATGCCACCACCATATTACCCAGGGAATATGCAGTGGCAATCGAATGCTGAAGACTCGAGTCTTGCTTCTGATCGAGAACCCGATGGTCGTAGGAGTTCTAAATCTCATAGGAACAAGAAGAAACATTCACATAAGGAGGTTTCAAGAACTTCAGAGCAAGAAGCAACCACAGAATCCGGTGAATCCAGTGCTGATAGTGAATCAGAAGAACAATCCGCAGATGATAAAAAGCAACATTCAGCAGAAAAGACACGTAAGAAAAGGCATGGCAAGAAATCCTCACGAACGGTCGTTATACGCAATATCAATTACATAACCTCGAAGAGGAACGGTGAAAAAGGCACTCACTCAGAGGATGATTCATTTGATGAGGGTGAATATATTGATGGAGATTCCATCAAACAGCAGGTAGAGGAAGCTGTTGGAACATTGGAGAGAAGAAATAAATCGACCTCTCGACACCAAAAGAAACAAAACGGCCATGGAAATGCTGATGGCTTAGATGACTCTACAGGACAGGAAACTAACGGGGTATCAAACAATTCAGAGGGAAAAAAGATCAGTAGCCCATGGGATGCTTTCCAGAGTCTTATTATGAGAGAAGAGGAGCCCGATAACTCAAGTGAACTGCCCTCAGTTCAGGATCGAGATGGCCATTTTACAGTCAAACCGGAGGGAAGGTCGCCTATGCTTAACTTGGAATCAGAGAGAGCACCGCGAAAGCATGAAGTTTCAAGTGATTCTTTTGTTGTGACAGACAGGAACTCAGGCAATGAAGGGAGAATGCACTTTGATAATTTCGAAGCTGGTGATGTTGCCAACCCAATTAATAGAAGGAGAGAAAGCACATATGAAGAGTTGTTATTTTCACAAAGAGGTGGAGAATCAGGTAACAATGGGCATCCAACCGTGCCCGATTTTACAAACGCATCTTCCAGAGTGAAAAACCATAGAGAAGATGATTGGATTGTCAACAATCCAGCTGGTAAATCAGAAAGTCAGTATCAAAATGGAGGTCCTAGAGTTTATGACACAGACTTCTCTTCATCGGCTCAAGACCATTTCTATGCAGAGAAAAACAAGAAAGATGTTTTGGCTGATGACTCTTTCATGATTCAGCCTCGACCATTAGTAGATGACCAATCTGACTTTATGTCTAGACGAGACATAAGCATGGTGTCGGACATTGTTGGAGATGCCGAAAATGAATATGTAAATCAAGAAACCGCTAAAGACGATAAGCCTGCAGCATTTGGCATCAGCGAACCAGATGACCTTTACATGATGCTTGATCGTGATATAGGGACAGAGCATACAGTAGCATCTTGGACACCAGAAATGGACTATGAAAGTAACTTTTCAACCATAGCCAATAGTAAGCACGATGATTTTGAAGCTGAAAATGGTGGTGATAATGAGTCACCTAGTTTAGAGAAGAGCAACAAAAATAAAGAATCTGGAGGCAAAGTTCCAAGTAAAGATGCAAGATCCAAATCTTTGGGAGGATCTCTTGCTAAGGGCAAATATGATGTTCAATCAAGAACAAAGAAACCGCTTTCTGGAAGCAGAACTACAGTTACTAAGAGCAAATTCGAGAAGGAAGAAGAGACCAGAAAGAGAATGGAAGATTTGGCGATTGAACGCCAAAAAAGAATTGCTGAAAGGAGTGCTTCAAGAAAATCTGGTAGTGTGAGCTCTAAGCCGGGTTTAACTAGGATTGAGAAGCCAAAAGGCCAATCCCAGGTCCAAGAAGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCGACCATAGATCGACTTGCAACTGCTCGTACTCCTCAGAATTTATCTGCAACTCAATCACCATCAGGTCAACCAAAAAAGCCGATCTCAAGAGCGAACGGCATTAGCACTCCTACCTCATCAGAAAAGCTCCCTAAATCTGACAACAACAACGGATGGCAAGGAAGACGTAGCAGCATTGGTAGCTGA 2946 43.21 MDPRTRLDHALFQLTPTRTRCELVISANGGATEKLASGLLQPFISHLKCAKDQISKGGYSITLRPVAGSNASWFTKGTLQRFVRFVSSPEVLERFVTTEKEIVQIEDSMSIDAEGNTTGADWNSKRSSPTPRVKGDSDENVDDVESKENPKIRLQRVLETRKAVLHKEQAMAYARALVAGYELDHIDDLISFADAFGASRLREACINFMDLCKRKNEDKLWIDEIAAMQAFSQPAFPYSETSGIVLAGEDIETNINAQAPRSDSSASQGSLENNQDGSLPKSAQMSMNGKAQVPMTWPNHPQYMHNFQGPLYPPYQGYLFPGMQMPPPYYPGNMQWQSNAEDSSLASDREPDGRRSSKSHRNKKKHSHKEVSRTSEQEATTESGESSADSESEEQSADDKKQHSAEKTRKKRHGKKSSRTVVIRNINYITSKRNGEKGTHSEDDSFDEGEYIDGDSIKQQVEEAVGTLERRNKSTSRHQKKQNGHGNADGLDDSTGQETNGVSNNSEGKKISSPWDAFQSLIMREEEPDNSSELPSVQDRDGHFTVKPEGRSPMLNLESERAPRKHEVSSDSFVVTDRNSGNEGRMHFDNFEAGDVANPINRRRESTYEELLFSQRGGESGNNGHPTVPDFTNASSRVKNHREDDWIVNNPAGKSESQYQNGGPRVYDTDFSSSAQDHFYAEKNKKDVLADDSFMIQPRPLVDDQSDFMSRRDISMVSDIVGDAENEYVNQETAKDDKPAAFGISEPDDLYMMLDRDIGTEHTVASWTPEMDYESNFSTIANSKHDDFEAENGGDNESPSLEKSNKNKESGGKVPSKDARSKSLGGSLAKGKYDVQSRTKKPLSGSRTTVTKSKFEKEEETRKRMEDLAIERQKRIAERSASRKSGSVSSKPGLTRIEKPKGQSQVQEAKKSPKPVLRSSTIDRLATARTPQNLSATQSPSGQPKKPISRANGISTPTSSEKLPKSDNNNGWQGRRSSIGS 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42428062 42434701 + Sed0003515.4 Sed04g3168 711771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3168 981 MobiDBLite consensus disorder prediction 488 513 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 331 590 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 801 816 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 558 572 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 113 130 - -
Sed04g3168 981 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 965 - GO:0009416(PANTHER)|GO:0045893(PANTHER)
Sed04g3168 981 MobiDBLite consensus disorder prediction 778 981 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 113 147 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 851 881 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 420 434 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 651 670 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 522 547 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 258 294 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 616 635 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 614 670 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 923 981 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 131 147 - -
Sed04g3168 981 MobiDBLite consensus disorder prediction 435 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3168 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3165 Sed-Chr4:42428062 Sed04g3168 Sed-Chr4:42428062 0.00E+00 dispersed
Sed04g3166 Sed-Chr4:42428062 Sed04g3168 Sed-Chr4:42428062 0.00E+00 dispersed
Sed04g3168 Sed-Chr4:42428062 Sed09g0665 Sed-Chr9:8730453 1.60E-75 dispersed
Sed04g3167 Sed-Chr4:42428062 Sed04g3168 Sed-Chr4:42428062 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42