Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3174 ATGCCAACAGTTTGGTTTTCTTTGAAAAAGTCCTTCCCTTGCAAACCAGAGCCATCAGAAGTTTATGATCCAAAGTGCAGGAAACAACTCAACACAATCACAACCAAGAAAGCAGCCAAAAAGTCAGGCTGTTCTTCTGGAAGGTCAGGCTGTTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAATCCGCCAATTTGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCGATTGCTCATGAAGTAATACTCAGCAACTCAAAGTGTGAGCTCAAGATCACTGGTTTTGGAGGCTTCCACCAAGAGGGTGTGGGAAATGCTAGCTTTGGCGGAGGCGGGGGCGGGAATTCGCCGTTTTTCGGTACTCTAAGGCCCGGAACTCCCGGTCCGGGGGAGAACTTTGTTAACAACTCAAATTCTCCTTTTAGTACTACCTCCATGACTTCTGCAAGAAAGGTTCCTTCTCCTTTATCATATAGAGATGGCTCTGAGGCTGGGATTACGGCTAAATCTAAGGGAAGTGGGGAAGTTCATACAAGCAGAAGGTTCTCGCCGCTAACCGAATCTAATGGGAATACGTTTTTGGCGGTTACTTGCCATAAATGTGGAGAGCAGTTCTGCAAATTGGAAGCTGCTGAATCTCACCATCTCTCCAAGCATGCAGTTACTGAGCTTGTGGAAGGTGATTCGTCGAGGAAAATTGTTGAAATAATCTGTCGAACGAACTTGTTGAAGTCCGAGAACAATAGCAACCGCATCGAGCGAGTTTTCAAAGTTCATAATATGCAGAAAACATTAGCTGGATTTGAAGAATATAGAGAAATGGTGAAGATCAAGGCAAGCAAACTTTTGAAGAAACACCCTCGATGCCTAGCCGATGGGAACGAGCTACTGAGGTTCTTCGGGACAACTTTAGCCTGCTCTCTTGGGCAAAACGGCTCCTCCAGCCTCTGCATATCACAGAAATGCATTGTCTGCAGAATCATAAGGAATGGTTTCTCAGTGAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCAACGAGTGGAAAAGCTTTCGAAACCATCGAAAAGGAGAAAGAAATCTCGGTGAAGAAAGCATTGATAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCATTGGAGAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTTTGGCTGGCAAAGTGGGATTACATTCCAACATTGAAGAACTTTATTTGCTGAATCCAAGAGCTTTGCTTCCTTGCTTTGTTGTTATTTGTAAACCATGA 1326 44.72 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKAAKKSGCSSGRSGCSRSIANLKDVIHGSKRHMENPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGGFHQEGVGNASFGGGGGGNSPFFGTLRPGTPGPGENFVNNSNSPFSTTSMTSARKVPSPLSYRDGSEAGITAKSKGSGEVHTSRRFSPLTESNGNTFLAVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNSNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLLKKHPRCLADGNELLRFFGTTLACSLGQNGSSSLCISQKCIVCRIIRNGFSVKKDMKEEVGVFTTSTSGKAFETIEKEKEISVKKALIICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42478358 42480566 - Sed0001219.1 Sed04g3174 711777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3174 441 MobiDBLite consensus disorder prediction 154 195 - -
Sed04g3174 441 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Sed04g3174 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 440 - -
Sed04g3174 441 FunFam C2H2-like zinc finger protein 232 440 - -
Sed04g3174 441 SUPERFAMILY ADP-ribosylation 233 440 - -
Sed04g3174 441 Gene3D - 238 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0822 Sed-Chr3:4918291 Sed04g3174 Sed-Chr4:42478358 7.50E-57 dispersed
Sed04g3174 Sed-Chr4:42478358 Sed07g1906 Sed-Chr7:32919466 1.00E-154 dispersed
Sed04g3174 Sed-Chr4:42478358 Sed01g3040 Sed-Chr1:34328683 4.10E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3174 - - - 0.0