Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3176 ATGTCATTTCGACGACTTATGGGTGTTGCAAAAAGGGGATGTTTGGTTGTTCTTGTGATTCTGTTCTGTGTTTCTTTAGCAACTTGCTTGAAGGACCATGAAGAGGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATTTCAACTCAGAGATGGCCGAGCTGTTATTGGTTAAGTGCAACCTGGATTTATTTCAGTTGAAGGAAGCAGTAGATGGCACTGACTCATGCTATGATGAAAGACCTTGGAGCATAAATGGAATTGCTTTTGATTGTGGGATGCTTGCAAAAGAAAAGACAAACATAATGCTAAGTTCCATGAATCCTCAGATGAAGCAGGCTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAATTCTGAAGCTTGGTACACCAGATACCTGGGGTCCTTGCTTTTTATGCCTGATACTCTTAGAAGGAAATTAAGTGCTGAAGAAGTGCCTGCTCCGGCACCTGAATTTCCACCTCCTAAATCTAAAAAAACACCATTTTTCCCAACAGATTCTGTAAACTCAAGTCTACCACCTTCAGCAGATGGAAATCCTTCAAGTAAAGCTTCGAGCACAAGTGGTAAAGCAGAGAAAAAATCGAATAATCATCAAGCAGTTGTCATCGCTGTTGTTGTAACAGCATTGGTGACTTTTATTCTTGTAGCTCTGCTCTTTTTATGCTATTATAAGAGGGGCTCCAAAGTGAAGAAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGCTTAAGTTCTTCGCCCAAGTATTCTGCCTTTGGGAGCTCTACTAAGGAAGACATGCTCATGAATCAATCAACTAATTTGAGTCACCACCAGAGTGCTCCATCTTTGGATAGCAGCCTGCACGTGGTCTCTGATGGTGCACGTGCCTCGATGCAGGGACGTCCATCATTTGGAAATGCTGGAATTGCTACTAAGTCATCTTTTGGATCAACGAATATGGCTGGTGGTACTAATGGCTCGGTGCCACCTACTCCAGGAGCATTGCCAGTCACCTCAGAGAATACAACTCCTCTGAAGCCTCCGCCTGGCAGGGCTGTTCCTCTGCCTCCTGAACCCCCTTCGTCTTTTAAACCTCCATCAAGCATGGCTAGTCCTCCTCCTCCACCTCCTGCACTGCCATCAAGACCTCTTGGAAATTCAGGAGGGCCAGGTCGCCCGCCTGGACCTCCTCCACCACCACCATCTGTACCAACAAACAAGGCAGGCCCTCGCCCACCACCACCTCCTCCCAGAAGTGGTGCTGCTCCCCCTCGGCCTCCTCCATTAGCACCCAAAGGTGCAAATCCACCGCGACCTCCAAAACCTTCTGGCCATGACGATGAAGGTTTAGATGAATCGGGTGCTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCTGATGATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTTAACGAAGAGATGATAGAAACTCTCTTTGGATATACACCAGTTGATAAAAACAAAAGTGACGGCAAGAAGGAGTCAACATCACAGGATCCTGTGCACCAGTTTATTCAGATCATTGATTCGAAGAAAGCACAAAATCTGTCCATTCTTTTGCGGGCACTAAATGTGACAAAAGAAGAAGTTCGTGCTGCGCTCCAGGAAGGAGCTGAACTTCCTGCTGAACTACTTGAGAATTTGCTGAGGATGGCACCAACACCAGACGAAGAACTCAAGCTTAAAATGTTTAATGGGGAACTTTCTCAACTTGGAAATGCTGAACGATTCCTTAAATGTTTGGTTGATATTCCATTTGGTTTCAAAAGGTTGGAAACTCTGCTTTTTATGGGCACTCTTCAGGAGGACATCACCATCACTAAGGAGTCCTTTGTTAACTTGGAGGTTGCATGCAAGGAACTTCGGAGCAGCAGGCTGTTTCTCAAACTTTTAGAAGCTGTTCTCAAGACAGGCAATCGGATGAACAATGGAACTTTTCGAGGAGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAGTTGTCTGATGTGAAAGGAAAAGATGGCAAGACTACACTGTTGCACTTTGTAGTCCAGGAGATAATCCGTACGGAAGGGATAAGAGCTTCCCGTAGTGCCACAGGAGCCCGAAGCGCCACAGGAAGCCAGAGCCTTTTGAGGACCTCATCAGAGGAACTGCTGGACGGAACAACTAACGAAACAGAAGAGCATTACTGTACCTTGGGTCTAGAGGTCGTCTCAGGCTTGAGTGATGAGCTTCAGAATGTGAAGAAAGCTGCTAGCATAGATGCCGATGGCTTGACTGGAACTGTTTCCAAGCTTGGACATGCACTGCTGAAAACAAGAGACTTTTTGAACAAAGACATGCAGGGTCTAGGCGAAGAGAGTCGATTTCACGAAACCCTGAAAAGCTTTGTGCAGAATGCTGAGGTTGATATCATGGCACTCCTAAAAGAAGAAAAAAGAATCATGGAATTGGTGAAAAGCACTGGCGACTACTTCCATGGAAGTGCAGGGAAGGACGAGGGCTTACGATTGTTTGTAATAGTGCGCGATTTCTTGATAATGATAGATAAAACATGCCGAGAGATAAAGGATGAACAAAAGAAGCTGGCAAAGGGACACAGAAAGGCAGCATCGACTTCTGATGTCAAACACCACCCTCCAACTCCAGTTGCTCCTGAACTACGACCTCCGTCTTCTCCCGATCTGAATCAGCTGATCTTCCCAGCAATTACTGATCGTCGGATGGGCGACTCAAGTTCAGATGAGGAGAGTCCATAG 2841 45.41 MSFRRLMGVAKRGCLVVLVILFCVSLATCLKDHEEEELILSQLADPITGDFNSEMAELLLVKCNLDLFQLKEAVDGTDSCYDERPWSINGIAFDCGMLAKEKTNIMLSSMNPQMKQALLDCLRKNFHVSGKDYNSEAWYTRYLGSLLFMPDTLRRKLSAEEVPAPAPEFPPPKSKKTPFFPTDSVNSSLPPSADGNPSSKASSTSGKAEKKSNNHQAVVIAVVVTALVTFILVALLFLCYYKRGSKVKKNDENHERPLLSLSLSSSPKYSAFGSSTKEDMLMNQSTNLSHHQSAPSLDSSLHVVSDGARASMQGRPSFGNAGIATKSSFGSTNMAGGTNGSVPPTPGALPVTSENTTPLKPPPGRAVPLPPEPPSSFKPPSSMASPPPPPPALPSRPLGNSGGPGRPPGPPPPPPSVPTNKAGPRPPPPPPRSGAAPPRPPPLAPKGANPPRPPKPSGHDDEGLDESGAPKAKLKPFFWDKVLANPDDSMVWHQIKAGSFQFNEEMIETLFGYTPVDKNKSDGKKESTSQDPVHQFIQIIDSKKAQNLSILLRALNVTKEEVRAALQEGAELPAELLENLLRMAPTPDEELKLKMFNGELSQLGNAERFLKCLVDIPFGFKRLETLLFMGTLQEDITITKESFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNNGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRASRSATGARSATGSQSLLRTSSEELLDGTTNETEEHYCTLGLEVVSGLSDELQNVKKAASIDADGLTGTVSKLGHALLKTRDFLNKDMQGLGEESRFHETLKSFVQNAEVDIMALLKEEKRIMELVKSTGDYFHGSAGKDEGLRLFVIVRDFLIMIDKTCREIKDEQKKLAKGHRKAASTSDVKHHPPTPVAPELRPPSSPDLNQLIFPAITDRRMGDSSSDEESP 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42484752 42492180 - Sed0017315.1 Sed04g3176 711779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3176 946 SMART it6_source 464 891 IPR015425 -
Sed04g3176 946 Gene3D Formin, FH2 domain 469 906 IPR042201 -
Sed04g3176 946 MobiDBLite consensus disorder prediction 310 472 - -
Sed04g3176 946 Pfam Formin Homology 2 Domain 469 875 IPR015425 -
Sed04g3176 946 PANTHER FORMIN-RELATED 142 943 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed04g3176 946 MobiDBLite consensus disorder prediction 162 211 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 179 211 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 361 454 - -
Sed04g3176 946 SUPERFAMILY Formin homology 2 domain (FH2 domain) 535 899 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 887 902 - -
Sed04g3176 946 ProSiteProfiles Formin homology-2 (FH2) domain profile. 464 902 IPR015425 -
Sed04g3176 946 PRINTS Proline rich extensin signature 433 458 - -
Sed04g3176 946 PRINTS Proline rich extensin signature 397 413 - -
Sed04g3176 946 PRINTS Proline rich extensin signature 351 363 - -
Sed04g3176 946 PRINTS Proline rich extensin signature 370 391 - -
Sed04g3176 946 PRINTS Proline rich extensin signature 414 431 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 887 946 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 455 469 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 724 743 - -
Sed04g3176 946 MobiDBLite consensus disorder prediction 318 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3176 Sed-Chr4:42484752 Sed05g0219 Sed-Chr5:1332627 6.60E-98 dispersed
Sed05g3088 Sed-Chr5:41093529 Sed04g3176 Sed-Chr4:42484752 2.20E-142 transposed
Sed04g3176 Sed-Chr4:42484752 Sed07g2651 Sed-Chr7:41953739 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3176 K28090 - csv:101213072 1253.81