Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3178 | ATGGTATCCCCTGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTATCGGATGCCAATTTCCCAGTCACGAGCTCCAGCTTCTTGTGGCCGATTCAGCCCTTTAACGCCACCGCTGATGTTGGTGTGGGAATTGATGGATCATCGGCCGATTTGGATGGCCGTCTAGAATCTGGCTCCAAGAAAAGGGCCAGACCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGAGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCCCTGAAAACTGACAAGGCTGCAATTTTAGTTGATGCCGTTCGAATGGTAAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTACAGGATAAGATTAAAGAGTTAAAGACCGAAAAGAATGAGCTTCGCGATGAAAAGCAGAGGCTCAAGGCAGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTCACCCTGGCTTCTTACCTCAACCAATCCCCACATTTGCTGCTCAGGGTCCAGCTCCTGGCAACAAGTTAGTTCCTTTCATGGGCTACCACCCAGGTGTTGCCATGTGGCAGTTCATGCCGCCCGCTGCGGTGGACACATCACAGGACCATGTACTCCGTCCACCAGTCGCCTAA | 711 | 49.23 | MVSPENPNWLFDYGLIDDIPVSDANFPVTSSSFLWPIQPFNATADVGVGIDGSSADLDGRLESGSKKRARPDSCSGSSSKACREKLRRDRLNDKFLELGSILDPGRPLKTDKAAILVDAVRMVNQLRSEAQKLKESNSSLQDKIKELKTEKNELRDEKQRLKADKEKLEQQVKSMHAHPHPGFLPQPIPTFAAQGPAPGNKLVPFMGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 42510963 | 42514161 | + | Sed0024068.1 | Sed04g3178 | 711781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3178 | 236 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 178 | - | - | |
Sed04g3178 | 236 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
Sed04g3178 | 236 | PANTHER | BHLH TRANSCRIPTION FACTOR | 8 | 236 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Sed04g3178 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 78 | 144 | IPR036638 | GO:0046983(InterPro) | |
Sed04g3178 | 236 | Gene3D | - | 65 | 124 | IPR036638 | GO:0046983(InterPro) | |
Sed04g3178 | 236 | CDD | bHLH_AtILR3_like | 80 | 155 | - | - | |
Sed04g3178 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 127 | IPR011598 | GO:0046983(InterPro) | |
Sed04g3178 | 236 | MobiDBLite | consensus disorder prediction | 59 | 83 | - | - | |
Sed04g3178 | 236 | Coils | Coil | 116 | 178 | - | - | |
Sed04g3178 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
Sed04g3178 | 236 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1427 | Sed-Chr1:10517660 | Sed04g3178 | Sed-Chr4:42510963 | 7.40E-43 | dispersed | |
Sed04g3178 | Sed-Chr4:42510963 | Sed05g3087 | Sed-Chr5:41083797 | 1.90E-46 | dispersed | |
Sed02g1399 | Sed-Chr2:50177074 | Sed04g3178 | Sed-Chr4:42510963 | 1.70E-31 | transposed | |
Sed04g3178 | Sed-Chr4:42510963 | Sed07g2654 | Sed-Chr7:41976708 | 1.40E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38317 | PF00010 | HLH | 6.20E-09 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3178 | - | - | - | 0.0 |