Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3178 ATGGTATCCCCTGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTATCGGATGCCAATTTCCCAGTCACGAGCTCCAGCTTCTTGTGGCCGATTCAGCCCTTTAACGCCACCGCTGATGTTGGTGTGGGAATTGATGGATCATCGGCCGATTTGGATGGCCGTCTAGAATCTGGCTCCAAGAAAAGGGCCAGACCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGAGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCCCTGAAAACTGACAAGGCTGCAATTTTAGTTGATGCCGTTCGAATGGTAAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTACAGGATAAGATTAAAGAGTTAAAGACCGAAAAGAATGAGCTTCGCGATGAAAAGCAGAGGCTCAAGGCAGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTCACCCTGGCTTCTTACCTCAACCAATCCCCACATTTGCTGCTCAGGGTCCAGCTCCTGGCAACAAGTTAGTTCCTTTCATGGGCTACCACCCAGGTGTTGCCATGTGGCAGTTCATGCCGCCCGCTGCGGTGGACACATCACAGGACCATGTACTCCGTCCACCAGTCGCCTAA 711 49.23 MVSPENPNWLFDYGLIDDIPVSDANFPVTSSSFLWPIQPFNATADVGVGIDGSSADLDGRLESGSKKRARPDSCSGSSSKACREKLRRDRLNDKFLELGSILDPGRPLKTDKAAILVDAVRMVNQLRSEAQKLKESNSSLQDKIKELKTEKNELRDEKQRLKADKEKLEQQVKSMHAHPHPGFLPQPIPTFAAQGPAPGNKLVPFMGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42510963 42514161 + Sed0024068.1 Sed04g3178 711781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3178 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Sed04g3178 236 FunFam Transcription factor bHLH34 66 124 - -
Sed04g3178 236 PANTHER BHLH TRANSCRIPTION FACTOR 8 236 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Sed04g3178 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 144 IPR036638 GO:0046983(InterPro)
Sed04g3178 236 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Sed04g3178 236 CDD bHLH_AtILR3_like 80 155 - -
Sed04g3178 236 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Sed04g3178 236 MobiDBLite consensus disorder prediction 59 83 - -
Sed04g3178 236 Coils Coil 116 178 - -
Sed04g3178 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Sed04g3178 236 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1427 Sed-Chr1:10517660 Sed04g3178 Sed-Chr4:42510963 7.40E-43 dispersed
Sed04g3178 Sed-Chr4:42510963 Sed05g3087 Sed-Chr5:41083797 1.90E-46 dispersed
Sed02g1399 Sed-Chr2:50177074 Sed04g3178 Sed-Chr4:42510963 1.70E-31 transposed
Sed04g3178 Sed-Chr4:42510963 Sed07g2654 Sed-Chr7:41976708 1.40E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38317 PF00010 HLH 6.20E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3178 - - - 0.0