Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3180 ATGGCGAAGTTCGCTTTAGGGTCCGAACCAGTGGTGGGTTCGTTAACTCCATCGAAGAAGAGGGACTACAGGGTCACCAATCGCCTTCAAGAGGGCAAAAGGCCTCTTTACGCTGTCGTTTTTAACTTCATCGATTCTCGCTACTTCAATGTCTTCGCCACTGTAGGCGGCAATCGGGTTACGGTATACCAATGTCTTGAAGGGGGTGTGATAGCCGTGTTGCAGTCTTACGTTGATGAAGATAAGGATGAGTCTTTTTACACTGTAAGCTGGGCATATAATGTTGATGGATCCCCATTTGTCGTTGCTGGTGGAATCAATGGAATAATCCGTGTAATTGATGCTGGGTGTGAAAAGATATACAAGAGTTTGGTTGGTCATGGTGATTCAATAAATGAGATCAGGACTCAGCCGTTGAAACCATCACTTGTGGTCTCTGCCAGCAAAGACGAATCTGTTCGATTGTGGAATGTTCATACAGGTATTTGCATTTTGGTATTTGCTGGTGCGGGTGGTCATCGTAATGAGGTCTTAAGTGTGGATTTCCATCCATCAGATATGTATCGCATCGCAAGCTGTGGAATGGACAACACCGTCAAAATTTGGTCAATGAAAGAGTTCTGGACATACGTGGAAAAATCTTTTACATGGACAGATCTTCCATCAAAATTTCCCACGAAGTACGTCCAATTTCCAGTGTTTATAGCATCAGTTCATTCAAATTATGTTGACTGCAGTAGGTGGCTCGGTGATTTTATTCTTTCGAAGAGTGTTGACAACGAAATAGTGTTATGGGAACCTAAAATGAAGGAGCAGTCACCTGGAGAGGGTACAGTGGATATACTTCAAAAGTACCCTGTTCCTGAATGTGATATTTGGTTCATCAAATTTTCCTGTGATTTCCATTACAATGCAGCTGCTATAGGAAACAGGGAAGGGAAAATTTTTGTGTGGGAACTTCAGTCAAGCCCCCCTGTTCTCATTGCAAGGTTGTCTCATGCCCAGTCGAAGTCGCCCATCAGACAGACAGCCATGTCCTTTGATGGAAGTATAATTCTAAGCTGCTGTGAAGATGGGACAATTTGGCGCTGGGACGTTGTAACAGCCACTTAG 1113 43.85 MAKFALGSEPVVGSLTPSKKRDYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAYNVDGSPFVVAGGINGIIRVIDAGCEKIYKSLVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVDFHPSDMYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSFDGSIILSCCEDGTIWRWDVVTAT 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42528984 42535786 - Sed0007148.1 Sed04g3180 711783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3180 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Sed04g3180 370 FunFam polycomb group protein FIE1 19 368 - -
Sed04g3180 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Sed04g3180 370 SUPERFAMILY WD40 repeat-like 27 366 IPR036322 GO:0005515(InterPro)
Sed04g3180 370 PANTHER POLYCOMB PROTEIN 12 365 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
Sed04g3180 370 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Sed04g3180 370 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Sed04g3180 370 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Sed04g3180 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 Gene3D - 19 367 IPR015943 GO:0005515(InterPro)
Sed04g3180 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 Pfam WD domain, G-beta repeat 121 157 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Sed04g3180 370 SMART WD40_4 160 203 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 SMART WD40_4 117 157 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 SMART WD40_4 67 114 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 SMART WD40_4 324 365 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 SMART WD40_4 229 266 IPR001680 GO:0005515(InterPro)
Sed04g3180 370 SMART WD40_4 278 319 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3180 K11462 - - csv:101214918 746.117
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g432 . . . Bda09g00384 . Bpe08g01140 . . . . . . . Car09g00842 Sed04g3180 Cpe06g00746 . Bhi09g01944 Tan01g4508 Cmetu04g2640 . Hepe01g1309 . . . . . . . . . Cone6ag0087 Cone9ag0102 . . Lsi04g01241 . Chy04g01012 . . . . . . . Bma07g01314 . . . . . . . . . . . . . . . . . Cla05g01537 Cam05g1644 Cec05g1650 . Clacu05g1638 Cmu05g1533 Cre05g1643 . . . Cme04g00806
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30