Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3192 ATGATCTGCGCTGTGAAACAATCTTCTAGGGCTATTCATTGCTCCGATTGTGTTATTCGGAGCAAAATCTCGATTCCCTTTCAGCGATCTTCGTTTCTTCCTCCTCTTCCGTTGCAAAAAGCTCGAAACTTTGCTGTTTCTGTTCGTAAGGCTGTTCATGTTTCTTCGCTTGAGAATTTCGGATCACTTGGGGTTCGTAAAGCGAATTTGATCAAATGCGAAGCTTACGAGGCTGAGCGATCGCAGCCGATCGAATCGAGCATTGAGTTGCCGAAGAGTCAGGCTCCTTCTGAGGCTGCGAAGAAGTTGAAGATCGGATCGTATTTCGCTCTTTGGTGGGCTTTGAACGTTGTTTTCAATATCTATAACAAGAAGGTTTTGAATGCGTACCCGTTTCCATGGCTGACTTCGACTCTGTCGCTCGCTGCTGGATCTTTGATCATGTTGATCTCATGGATGACGAGAATCGCCGAGGCCCCGAAAACCGATCTTGAGTTTTGGAAGTCTTTGCTCCCTGTTGCTATTGCCCATACCATTGGACATGTTGCTGCAACTGTGAGTATGTCAAAGGTTGCAGTTTCGTTCACTCACATCATCAAGAGTGGGGAACCTGCTTTTAGCGTATTGGTTTCGAGATTCTTGTTGGGTGAGACCTTCCCACTTTCTGTCTACTTGTCGCTTGTTCCAATTATCGGTGGATGCGCTCTCGCTGCTGTGACTGAGCTCAACTTTAACATGACCGGCTTCATGGGTGCCATGATATCAAACTTGGCATTTGTATTCCGTAACATATTTTCGAAAAGGGGCATGAAGGGAAAATCTGTTAGCGGGATGAACTACTATGCATGTTTATCAATTTTATCTTTGATAATCCTGACACCATTTGCATTTGCTGTGGAGGGACCACAGTTATGGGCTGCTGGATGGCAAACAGCCATATCTCAGATCGGACCTAATTTCGTTTGGTGGGTTGCAGCACAAAGTATATTCTACCATCTCTATAACCAGGTGTCTTACATGTCCTTGGATGAGATTTCTCCCTTGACGTTCAGCGTTGGAAACACCATGAAACGTATATCGGTCATAGTTTCTTCCATCATCATCTTCCGCACGCCCGTGCAGCCAGTCAATGCTCTAGGAGCTGCCATTGCAGTTCTCGGAACCTTTATATACTCGCAGGCAAAGCAATGA 1191 45.68 MICAVKQSSRAIHCSDCVIRSKISIPFQRSSFLPPLPLQKARNFAVSVRKAVHVSSLENFGSLGVRKANLIKCEAYEAERSQPIESSIELPKSQAPSEAAKKLKIGSYFALWWALNVVFNIYNKKVLNAYPFPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDLEFWKSLLPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLSVYLSLVPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLIILTPFAFAVEGPQLWAAGWQTAISQIGPNFVWWVAAQSIFYHLYNQVSYMSLDEISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAVLGTFIYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42612918 42616223 + Sed0007284.1 Sed04g3192 711795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3192 396 Pfam Triose-phosphate Transporter family 103 392 IPR004853 -
Sed04g3192 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Sed04g3192 396 PANTHER SOLUTE CARRIER FAMILY 35 99 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Sed04g3192 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 103 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3192 Sed-Chr4:42612918 Sed12g0279 Sed-Chr12:1599613 4.40E-88 dispersed
Sed10g0619 Sed-Chr10:4127415 Sed04g3192 Sed-Chr4:42612918 1.80E-150 transposed
Sed04g3192 Sed-Chr4:42612918 Sed07g2664 Sed-Chr7:42095070 4.20E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3192 K15283 - csv:101220046 717.998