Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3210 ATGGAAGGTACAATTCTTAGAAGGGTTATTCCATCAGACAACAGTTGCCTCTTCAATGCTGTTGGGTATGTTATGGACCACGACAAACATAAGGCCGCCGAGCTGAGACAGGTCATAGCTGCAACAGTAGCTAGTGATCCAACAAGGTATTCTGAAGCATTTCTTGGAAAGCCAAATGAGGAGTACTGTTCTTGGATTCTTGATTCAGAGAAGTGGGGAGGCGCCATTGAGCTTTCGATACTATCTGAATATTATGGTCGCGAAATTGCAGCATATGATATCCAGACCACTCGATGTGATTTGTATGGTCAGGAAAAGAAGTACTCGGAAAGGGTTCTACTGATATATGATGGACTCCACTATGATGCTTTAGTTATGTCGCCATCTGAGGGAGCGCCAGAGGAATTTGATCAGACCGTATTCTCTGTTAATAGGGACAGGACAATTGGCCCCGTTGAGGAACAAGCTCTTCATTTTACAAAAGAGCAGCAAAGGAAAAGGAGTTTTACCGACACCGCCAACTTCACTCTGCGCTGTGGCGTTTGCCAAATTGGAGTCATTGGCCAAAAGGAAGCTGTAGAACACGCAAAAGCTACGGGTCATGTCAACTTCCAAGAGTATAGATGA 627 44.66 MEGTILRRVIPSDNSCLFNAVGYVMDHDKHKAAELRQVIAATVASDPTRYSEAFLGKPNEEYCSWILDSEKWGGAIELSILSEYYGREIAAYDIQTTRCDLYGQEKKYSERVLLIYDGLHYDALVMSPSEGAPEEFDQTVFSVNRDRTIGPVEEQALHFTKEQQRKRSFTDTANFTLRCGVCQIGVIGQKEAVEHAKATGHVNFQEYR 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42719677 42725748 - Sed0017183.1 Sed04g3210 711813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3210 208 SUPERFAMILY Cysteine proteinases 7 125 IPR038765 -
Sed04g3210 208 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 4 206 - GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)|GO:0030433(PANTHER)|GO:0030968(PANTHER)
Sed04g3210 208 Gene3D - 1 173 - -
Sed04g3210 208 ProSiteProfiles OTU domain profile. 5 127 IPR003323 -
Sed04g3210 208 CDD OTU_plant_OTU1_2-like 3 166 - -
Sed04g3210 208 FunFam ubiquitin thioesterase OTU1 1 173 - -
Sed04g3210 208 Pfam OTU-like cysteine protease 11 107 IPR003323 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3210 Sed-Chr4:42719677 Sed04g3211 Sed-Chr4:42719677 8.80E-120 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3210 K13719 - csv:101222942 402.519