Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3216 ATGGGTCAGATCGTGAAGCGGAAGAAGAAAGGGAGACCGTCGAAGGCAGATCTGGCACGGCGGTCCGGCGGAGGGCTGGCATCGTCGGAATCCGAGCCACGGCGGAGCCTCCGCCGCCGGAATGCGAGGTACAACGTCGATTACGACGACTTTCTCGAGGAAGACGACGACGAGGATGAGGAAGACGACGAGCGAGGGAGAGAGAAGAAGCTCAAGCTCGTCGTGAAGCTGAACCAGGGCAGAGACGGTGAGAATCTGTCACCGGTGGCCGCCGGACTTTCTAGGTCAGGGGCGCGTGGTGCGCACGCGTCGGAGTACGGCTCGTCGGCGTCGGAAGGGGAGGATGAACCGGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGCGGCGAGGATGATGATGAAGATGAAGATTACGACGATCAAATTCGTGGAGATGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCTAAAGGGTCCGACTCTGTTCCAGGGACTCCCTCAGATCGATCATCTGGGCTTCCATTGCCGGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAGCCAGTTGATCCTGAAGAGCTTCCTGACTATTTCGATGTCATCGAGCATCCTATGGACTTTGCTACCGTGAGGAATAAGTTGGCCAGCGGATCATATTCAACTTTGGAACAGTTTGAGAATGATGTTTTTCTGATATGCTCAAATGCGATGCAATACAATTCACCAGAAACAATTTACCATAAACAGGCACGTTCCATTCAAGAGCTAGCTAAGAAGAAATTTGAGAGAGTAAGAATTGAAGTTGAACGCTCTGAGAAAGAGCTGAAGGAGCAGAATGCAAAATCCAATTCTCTTTTCAAGAAACAACCAGCAAAGAAGCCTTTTTTCAGGACTTTGCAGGAACCCATTGAATCTGATTTTTCCTCAGGTGCAACACTTGCTGCTGCAGGGGATGTACAGAATAGTGCCAATCCAATCCAAGGTGCTAACTTTGAGGTACCTAACAATATTGATGGACAAGTAGAGGGTTGTTTCTCCCTCTTTGATTCTAGTAATCCGGACAAGGCTGAAGAACTCTTCTCAGGAAAGGGTCTTCTAGGCAAATTAGGGAGAAAGACATCTGTGTTCGATGACAACCGACGTGCAACCTACAACATTTCGAATTCACCAGCGCCAAGATCAGAGTCAATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTGCGGTTGGGCTTCATGCAGAGTATTCCTATGCTAGGAGTCTGGCTCGATTTTCTGCAACACTTGGTCCTGTTGCTTGGAAAGTCGCATCCCAGAGGATCGAGCAGGCCATACCTGTTGGATGTAAATTCGGTCGAGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCAGTATTAATGTTTGAGAACAACCAGAAGGAACCTAGTCTTAATAGTAACTTACATTCTACCAGCGAATTAAGAAAGGACGGAAAGTCTTCAGACACTCTTTTGGCAAAGAAGGAACATCATTCTCTAAGTGGACCAAGTACAGAAGTGAATGGTCTTGCTAGAGGATCCACCTTAGATAAACCATCTTTCTTTAGGTCTGCTACCCCAAGTCCTGGTCTATCTCCACGGCAAAACCTACCGACCAAGAATCGTCCCGAGGGAGAGAAGGTTAAAAAGCAAGTTGAATTGAATTCCTTTCCCTCTCCAAGACAAAGCAAAGTTGATCTTGGCGTAGAAAAGCAACTTCCAGCCAATCCGAATATGACTGCTTCTAGGTCTAGAGATATGGCGTCGGTTAACTTAAATCTTGTCCAATCTGCACCTTTTAAACTGCCCAGTGTTAACGGGGTTGTAACTGGCGGATTGCCGAACGGAATACTCCCAAGCAATTGTTTAAACAGTCCAAGGGCTGCCTTATCATCTTCTAGCTTACCTTCCCAAACAGTACCAGTGGCAACTTCTCATGGACAGGACCTAGGTCCTGGTAAGCCAGTGCATTTGATGAGGATGATGTCTGAAAGAGCCCCAAAACAAGAGAGCTCATCTAATCAATCTTCATCCGATTCTCCACGTGCTTTGTCATCAGCTCCCTCTGCCATGAGAGACGATTTGAACAATGCTGCTGCAGTAGCTTCTCGTGCTTGGATGTCGATTGGGGCTGCTGGAGGGTTTAAGCAAGTCAGAGATAATCCCTCACCTAAAAGTCAAATCTCTGCAGATTCACTATATAATCCAGCTCGGGAATTTCAACCGCAAATGACACGAGCATGGGGAGAGTTTCGTGCTGGAAGCAATCAGCTTCAGTCTGAGAAAAACGCTTTCCCTATGCAGGCATTTGTTCCACAAACCACTCTTGTACCAAACGAACAACAGCTGCACAACCGGTCCATGATTTACCCTCAGCTAGTACATGCTGACATGTCTAAGTTCCAGTTGCATTCGACTTGGCGAGCTCTCAGCCCGCATAACCAACCAAGGAAGAAACAGGAAATGCTTCCTCCCGACTTGAATATCGGTTTTCAGTCGCCCGGGTCTCCCGTGAAACAATCCTCTAGTGCTCTGGTGGACTCCCAGCAGCCAGACCTGGCTTTACAACTTTAA 2661 47.58 MGQIVKRKKKGRPSKADLARRSGGGLASSESEPRRSLRRRNARYNVDYDDFLEEDDDEDEEDDERGREKKLKLVVKLNQGRDGENLSPVAAGLSRSGARGAHASEYGSSASEGEDEPERKPLKKRRIGGGEDDDEDEDYDDQIRGDGDENEDDDIDEERGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYFDVIEHPMDFATVRNKLASGSYSTLEQFENDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKEQNAKSNSLFKKQPAKKPFFRTLQEPIESDFSSGATLAAAGDVQNSANPIQGANFEVPNNIDGQVEGCFSLFDSSNPDKAEELFSGKGLLGKLGRKTSVFDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFSATLGPVAWKVASQRIEQAIPVGCKFGRGWVGEYEPLPTPVLMFENNQKEPSLNSNLHSTSELRKDGKSSDTLLAKKEHHSLSGPSTEVNGLARGSTLDKPSFFRSATPSPGLSPRQNLPTKNRPEGEKVKKQVELNSFPSPRQSKVDLGVEKQLPANPNMTASRSRDMASVNLNLVQSAPFKLPSVNGVVTGGLPNGILPSNCLNSPRAALSSSSLPSQTVPVATSHGQDLGPGKPVHLMRMMSERAPKQESSSNQSSSDSPRALSSAPSAMRDDLNNAAAVASRAWMSIGAAGGFKQVRDNPSPKSQISADSLYNPAREFQPQMTRAWGEFRAGSNQLQSEKNAFPMQAFVPQTTLVPNEQQLHNRSMIYPQLVHADMSKFQLHSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSALVDSQQPDLALQL 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42761102 42766810 - Sed0021197.1 Sed04g3216 711819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3216 886 MobiDBLite consensus disorder prediction 112 131 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 548 568 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 695 714 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 1 186 - -
Sed04g3216 886 ProSitePatterns Bromodomain signature. 204 260 IPR018359 -
Sed04g3216 886 SUPERFAMILY Bromodomain 168 284 IPR036427 GO:0005515(InterPro)
Sed04g3216 886 ProSiteProfiles Bromodomain profile. 198 268 IPR001487 GO:0005515(InterPro)
Sed04g3216 886 Pfam Bromodomain 193 272 IPR001487 GO:0005515(InterPro)
Sed04g3216 886 MobiDBLite consensus disorder prediction 656 718 - -
Sed04g3216 886 Gene3D - 157 306 IPR036427 GO:0005515(InterPro)
Sed04g3216 886 PRINTS Bromodomain signature 231 249 IPR001487 GO:0005515(InterPro)
Sed04g3216 886 PRINTS Bromodomain signature 215 231 IPR001487 GO:0005515(InterPro)
Sed04g3216 886 PRINTS Bromodomain signature 249 268 IPR001487 GO:0005515(InterPro)
Sed04g3216 886 SMART bromo_6 179 287 IPR001487 GO:0005515(InterPro)
Sed04g3216 886 MobiDBLite consensus disorder prediction 132 155 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 524 580 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 862 886 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 1 15 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 49 63 - -
Sed04g3216 886 CDD Bromodomain 186 282 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 656 674 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 841 886 - -
Sed04g3216 886 Coils Coil 275 309 - -
Sed04g3216 886 MobiDBLite consensus disorder prediction 497 516 - -
Sed04g3216 886 PANTHER BROMODOMAIN CONTAINING PROTEIN 6 885 IPR051831 -
Sed04g3216 886 MobiDBLite consensus disorder prediction 32 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3216 K22184 - - csv:101204699 1353.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3216 Sed-Chr4:42761102 Sed04g3790 Sed-Chr4:46459881 5.00E-71 dispersed
Sed04g3216 Sed-Chr4:42761102 Sed05g2164 Sed-Chr5:34565250 1.20E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39