Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3225 ATGGAAGCACCGCCGTTTTCAACCGCCATTTCTTCTTCTTCTTTTTCTTCTGATTCTCAGACTGTATTTCGACCACTTTCATCGCCATCTCAAACGAGTTCTCTCTTTTTTCTTCGCAAAAACAGTTACAAAACTCGTCATCTCAAAGGTAAGTCCTCCGGTAAGCTCGCAGTTCGGGCCTCAGCTGCTGGTGATTCAGTCGTAACCTTGCTCGATTACGGCGCCGGTAATGTTCGTAGCGTGAGGAATGCTATTCGTTACCTTGGCTTGGACATCAAAGATGTGCATACTCCAGAAGATATCCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCAGCCATGGATGTGCTAAACAGTAAAGGCATGTCTGAAGCCCTCTGCACTTATATTGAGAATGACCGCCCATTTTTAGGCATATGTCTTGGGCTTCAACTACTATTTGAATCAAGCGAGGAGAACGGACTAGTTAAAGGTCTTGGCTTAATACCAGGTGTGGTTGGGCGTTTTGATTCTTCCAACGGTTTTAGGGTGCCTCATATTGGGTGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATCTTGGATGAAATTTCTAATCGTCATGTCTACTTTGTTCACTCTTATCGTGCTATGCCTTCAGACAAGAACAAGGAGTGGATCTCTTCTACTTGCAGGTATGGCGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGATGTAGGCCTGTCTGTCCTAAGAAGATTCTTGTTTCCAAAGCCAACTGTGACCAAGAAGTCTACTGAGGGAAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGGCAAATGACCAAGGGGACCTTGTTGTTACAAAAGGGGACCAGTATGACGTAAGGGAGAAAACAGACGAGAATGAGGTGAGGAACCTTGGTAAGCCGGTAGAGCTTGCTGGACAGTACTACAAAGATGGAGCTGATGAGGTCAGTTTTTTGAATATAACTGGTTTTCGTGACTTCCCTCTCGGCGACTTGCCAATGTTGAAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGTGGGATTAAAGATTTTAAGGATGCCAATGGAAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATTGGTAGTGATGCAGTTTATGCTGCTGAGGAATATTTAAGAACGGGCGTAAAGACAGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAATCAGGCTGTTGTTGTAAGTATTGATCCTCGTAGAGTGTACCTGAAAAGTCCTGACGATGTAGAGTTTAAAGTTATACGAGTGACAATCCCGGGTCCTAATGGAGAAGAATATGCATGGTATCAGTGTACAGTTAATGGAGGTCGAGAAGGTCGACCTATTGGGGCTTATGAGCTTGCGAAAGCAGTCGAGGAACTTGGAGCTGGAGAAATACTGCTAAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATCTGGTAAAGCTGATATCAGATTCTGTGAGCATCCCCGTTATTGCCAGCAGTGGTGCTGGATCTCCTGACCATTTCTCTGAGGTGTTTAACAAAACGAATGCGTCCGCTGCCCTTGCGGCTGGCATTTTTCATCGTAAAGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTATTAAAGGAGGGCATAGAAGTCAGAATCTAA 1791 44.05 MEAPPFSTAISSSSFSSDSQTVFRPLSSPSQTSSLFFLRKNSYKTRHLKGKSSGKLAVRASAAGDSVVTLLDYGAGNVRSVRNAIRYLGLDIKDVHTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMSEALCTYIENDRPFLGICLGLQLLFESSEENGLVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKEWISSTCRYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKPTVTKKSTEGKASRLAKRVIACLDVRANDQGDLVVTKGDQYDVREKTDENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLKVLRYTSENVFVPLTVGGGIKDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPDDVEFKVIRVTIPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPDHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42792573 42818421 - Sed0009199.1 Sed04g3225 711828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3225 596 FunFam Imidazole glycerol phosphate synthase hisHF 286 596 - -
Sed04g3225 596 NCBIfam imidazole glycerol phosphate synthase subunit HisH 68 266 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Sed04g3225 596 SUPERFAMILY Class I glutamine amidotransferase-like 67 267 IPR029062 -
Sed04g3225 596 SUPERFAMILY Ribulose-phoshate binding barrel 283 595 IPR011060 -
Sed04g3225 596 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 284 596 IPR050064 GO:0000107(PANTHER)
Sed04g3225 596 Gene3D Aldolase class I 289 596 IPR013785 -
Sed04g3225 596 Pfam Glutamine amidotransferase class-I 70 265 IPR017926 -
Sed04g3225 596 NCBIfam imidazole glycerol phosphate synthase subunit HisF 284 595 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Sed04g3225 596 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 67 275 - -
Sed04g3225 596 FunFam Imidazole glycerol phosphate synthase hisHF 63 288 - -
Sed04g3225 596 Gene3D - 64 288 IPR029062 -
Sed04g3225 596 CDD HisF 286 590 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Sed04g3225 596 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 67 268 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Sed04g3225 596 PIRSF IGPS_HisHF 65 596 IPR014640 GO:0000105(InterPro)|GO:0000107(InterPro)|GO:0016763(InterPro)|GO:0016833(InterPro)
Sed04g3225 596 CDD GATase1_IGP_Synthase 68 266 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Sed04g3225 596 Pfam Histidine biosynthesis protein 287 578 IPR006062 GO:0000105(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3225 K01663 - - csv:101205184 1073.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g538 Blo03g00552 . Bda07g00369 . . . . . . . . Cma09g00961 Car01g00993 Car09g00876 Sed04g3225 Cpe06g00777 Cpe02g00781 Bhi09g01662 Tan01g4575 Cmetu01g2068 . . Mch11g1201 . . . . . . . . . . . . Lsi02g01893 Csa07g01105 . . . . . . Bpe11g00554 . . Bma14g00332 . Cmo01g01168 Cmo09g00961 . . . . . . . . . . . . . Cla09g01020 Cam09g1076 Cec09g1076 Cco09g1096 . . Cre09g1042 . . . Cme01g01017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002500 2 3 2 2 2 1 4 2 1 3 1 1 2 2 1 4 1 4 3 2 2 2 2 2 1 1 2 2 1 1 59