Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3257 ATGCCTTCTGTTAGCTTCTTCATCCTTTTCCTTCTTCTTCTTCTTCTTCCATTGGCCTGTTCGCTCAACCAAGAAGGACTGTATCTTCAACGAGTCAAACTCGGCCTCTCCGATCCAACTCACTCCCTCTCTTCATGGAACCCTCGCCACAGCACTCCCTGCAACTGGTCCGGCGTCTCCTGCGATTCCGCCGCTCGCTCCGTCGTCGCCGTCGACCTCTCCGACCTCCTTCTCGCCGGCCCTTTCCCCACCTTCCTCTGCCGCCTTCCTTCCCTCTCCTCCCTCTCCCTCTCCAACAACGCCATCAACGGTTCCCTTTCCGACGACGTCGCCGCCTGTTCCGGCCTCCGGCTGCTTAACCTCTCGCAGAATCTCCTCTCCGGTTCCATTCCCGACGCGCTCTCCAAGATCTCGAACCTCCGATCTCTGGATCTCTCCGGAAACAACTTCTCCGGCGAGATTCCGGCCAGCTTCGGCGGGTTTCCGCGGCTGGAGTCGCTGAGTTTGGTCGATAATCTTCTCAACGGTACTGTTCCGGCGAGTTTGGGCAACGTTTCTAGTTTGAGAGAGCTTCAACTTGCGTACAATCCGTTCTCGCGGAGTGAGATTCCGAGTGCGTTTGGGAATTTGACGAATCTGGAGATTCTCTGGCTTGCGAACTGTAATCTCGCCGGTCAGATTCCGGAAACCCTCGGCGGGATGACTCGGCTCAAGAATCTGGACTTGTCAAACAACAGACTCAGCGGCTCGATTCCGGCGTCGGTAACTGAAATGAAGAGTCTAGTTCAGATTGAACTGTTTAACAATACCCTCTCCGGCGAGTTGCCGTTGGGATTGTCGAATTTAACTGCGCTTCGACGAATCGATGTGTCGATGAATCAGTTGACTGGAACGATTCCAGACGAGCTTTGTGCATTACAGCTCGAGTCGTTAAATTTGTTCGAGAATCGATTGGAAGGGCAGTTGCCGGAGAGTATCGTTGAATCCCCATATTTGAATGAGCTTAAATTGTTTAACAACAAGCTTAGTGGACAGTTGCCCAGTAAACTCGGCCAAAACTCGCCGTTAGTGCATCTCGACGTTTCATACAACGGGTTTTCCGGCCGAATCCCGGAAAATTTGTGTGGGAAAGGGGCATTGAAAGAGCTTATACTGATTTACAATTCGTTTTCCGGGAAAGTTCCGGCGAGTCTGGGAAAATGCAGGAGCCTAAGCCGGATTCGGATGAGGAACAACAAACTCTCCGGTTCGGTTCCTGATGATTTTTGGGGTCTGCCAAATGTGTATTTGCTTGAGCTAGTTGAGAATTCGCTATCTGGGTCTATTTCTTCATTGATATCTAACGCTAAGAATCTCTCTATTTTGATGATATCTGATAATCAGTTTTCAGGGTCGATTCCGGACGAGATTGGGTCGTTAAGCAATTTGACTGAACTTTCAGGTAGTGATAATATGTTTTCCGGTGAAATTCCGGGAACTTTGGTGAAGTTAAGCTTGTTGGGTACACTCGATCTAAGCGAGAACAAGCTTTCTGGAGAATTACCAAAGAAAATTGGAGCTCTGAAGAGGCTAAACGAGTTAAATTTGGCAAACAATAGGCTATCTGGAAGTATCCCGAGTGAAATTGGAAGCCTACCTGTACTTAATTATCTTGATCTCACTAATAACCATTTTAGTGGAATTATACCTCTTGAATTGCAGAATTTGAAGCTGAATTCCCTAAATCTGTCGAACAATCTTTTATCAGGGGCACTTCCTCCTCTTTATTCAGAGCAAATTTACAGAAATAGTTTTTTGGGTAATCCAGGTTTGTGCAAGAATGAGCCAAGCCTTTGTCCTCGCGTTGGAAAAGGCAAAAACCAAAGCTACTGGCTTCTCAGAGCCATTTTTCTTCTTGCTATTGCTGTTTTGGTTGTTGGGGTCATTTGGTTCTTCTTTAAGTACAAAGAATTCAAGAAGAACAAGAAAGGAAGTGTCATTTCCAAGTGGAGGTCATTTCACAAACATGGTTTCAGTGAATATGAAATCGCAGATTGTCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCATCAGGCAAAGTGTACAAAGTTGTGCTGAAAAACGGCGAAGTCGTGGCGGTGAAGAAGTTATGGCAGCAAGGAACAAAGAAAGAGGAGATCAGTTTGGATTCAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACATTGGGGAAGATCCGGCATAAGAATATTGTGAGGTTATGGTGCTGTTGCAACACTGGCAATTGCAAGCTGCTTGTTTATGAGTACATGCGTAATGGGAGCTTGGGAGATTTGCTGCACGGTAGCAGAAAGCGATATTTGGATTGGCCTACAAGGTTTAAAATAGCTTTGGATGCAGCCGAAGGGCTTTCGTATTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATTAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCAGACTTTGGATTAGCTAAGTTCTTGAATGCTGGGAAGGGCTCAGAATCTATGTCTGTCATTGCTGGTTCTTGTGGCTACATTGCACCAGAATATGCTTATACATTAAGAGTAAACGAAAAGAGTGATATCTACAGCTTTGGAGTGGTGATTTTAGAGCTGGTGACAGGGAGGCCTCCAAATGATCCAGAATTTGGAGACAAAGACTTGGCAAAGTGGGTCTATGCCACTGCCAACTGCAAAGGGCTCGACCAAGTGATCGATCCGAAACTCAGTCCCGAATGTAGGGAAGAAATCTACAGAGTCCTCAACGTGGCACTGCTCTGCACAAGCTCACTCCCCATCAACCGCCCATCAATGAGAAGAGTCGTCAAACTGCTGCAAGAATCCGCCACAGAAACCAGACCTGCCCCTGTTAGTAAGGAAGCTAAACTTTCTCCATATTTTTCCTAG 2937 46.58 MPSVSFFILFLLLLLLPLACSLNQEGLYLQRVKLGLSDPTHSLSSWNPRHSTPCNWSGVSCDSAARSVVAVDLSDLLLAGPFPTFLCRLPSLSSLSLSNNAINGSLSDDVAACSGLRLLNLSQNLLSGSIPDALSKISNLRSLDLSGNNFSGEIPASFGGFPRLESLSLVDNLLNGTVPASLGNVSSLRELQLAYNPFSRSEIPSAFGNLTNLEILWLANCNLAGQIPETLGGMTRLKNLDLSNNRLSGSIPASVTEMKSLVQIELFNNTLSGELPLGLSNLTALRRIDVSMNQLTGTIPDELCALQLESLNLFENRLEGQLPESIVESPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGRIPENLCGKGALKELILIYNSFSGKVPASLGKCRSLSRIRMRNNKLSGSVPDDFWGLPNVYLLELVENSLSGSISSLISNAKNLSILMISDNQFSGSIPDEIGSLSNLTELSGSDNMFSGEIPGTLVKLSLLGTLDLSENKLSGELPKKIGALKRLNELNLANNRLSGSIPSEIGSLPVLNYLDLTNNHFSGIIPLELQNLKLNSLNLSNNLLSGALPPLYSEQIYRNSFLGNPGLCKNEPSLCPRVGKGKNQSYWLLRAIFLLAIAVLVVGVIWFFFKYKEFKKNKKGSVISKWRSFHKHGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEVVAVKKLWQQGTKKEEISLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMRNGSLGDLLHGSRKRYLDWPTRFKIALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYATANCKGLDQVIDPKLSPECREEIYRVLNVALLCTSSLPINRPSMRRVVKLLQESATETRPAPVSKEAKLSPYFS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43067962 43071914 + Sed0010459.1 Sed04g3257 711860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3257 978 SUPERFAMILY RNI-like 69 372 - -
Sed04g3257 978 ProSiteProfiles Leucine-rich repeat profile. 236 258 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 PRINTS Leucine-rich repeat signature 237 250 - -
Sed04g3257 978 PRINTS Leucine-rich repeat signature 497 510 - -
Sed04g3257 978 Gene3D Transferase(Phosphotransferase) domain 1 764 972 - -
Sed04g3257 978 SMART LRR_typ_2 545 568 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 210 233 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 234 258 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 497 521 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 282 306 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 137 160 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 185 209 IPR003591 -
Sed04g3257 978 SMART LRR_typ_2 89 113 IPR003591 -
Sed04g3257 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3257 978 FunFam Receptor-like protein kinase HSL1 663 763 - -
Sed04g3257 978 ProSiteProfiles Protein kinase domain profile. 680 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3257 978 SUPERFAMILY L domain-like 356 606 - -
Sed04g3257 978 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Sed04g3257 978 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Sed04g3257 978 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Sed04g3257 978 SMART serkin_6 680 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3257 978 Gene3D Ribonuclease Inhibitor 177 278 IPR032675 -
Sed04g3257 978 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Sed04g3257 978 Gene3D Ribonuclease Inhibitor 279 615 IPR032675 -
Sed04g3257 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 958 IPR050647 -
Sed04g3257 978 Pfam Leucine rich repeat 90 150 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine rich repeat 212 271 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 185 - -
Sed04g3257 978 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 972 - -
Sed04g3257 978 FunFam Receptor-like protein kinase HSL1 307 614 - -
Sed04g3257 978 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 187 210 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 307 326 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Sed04g3257 978 Pfam Protein kinase domain 682 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3257 978 SUPERFAMILY Protein kinase-like (PK-like) 672 955 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2129 Sed-Chr1:16000128 Sed04g3257 Sed-Chr4:43067962 1.70E-152 dispersed
Sed04g3257 Sed-Chr4:43067962 Sed14g1490 Sed-Chr14:23242860 7.50E-121 dispersed
Sed04g3257 Sed-Chr4:43067962 Sed08g2241 Sed-Chr8:36104350 4.80E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79078 PF00069 Pkinase 4.00E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3257 - - - 0.0