Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3258 ATGTCTGAAGAACAAGCAGCTTCAAATGCTTTCATTTGCAGCCTTCCATCACTTGGATCTAACAACAACCCTCCTGTTGTTAAGAAGAAGAGAAATCTCCCTGGAAATCCAGATCCAGAAGCGGAAGTGGTAGCATTATCACCGAAAACCCTAATGGCGACGAACCGATTCTTGTGCGAGGTATGCGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGTTGAAGCAAAGAAGCAATGCAAGCAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCACCATCCTTCAAGAGCCCTTGGAGACCTAACAGGAATTAAAAAGCACTTTTGTAGGAAACATGGAGAGAAGAAGTGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTTTAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGACAGCTATGTAACTCACAGAGCATATTGTATGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCAACCATAAACAACAACAACAACAACAACAATTCATTCACAACCACAGCTGAAAACAACATCAACATCAACAATTACAATTTCCTAAACACCATCACAAATCCTCACCAATACTTCCCTAATTCCTCCAACTTTTTCAGACCAGATCATGAAACTTTCCAAATGTTCCTTAACAACAACAACAACTCTCTCACACCCACCATAGGCCTCCCCTTTTGGATTCCAAATCCCCACCAAATCAATCCGCTCCACGACGACAATGACAACGACAACAATTTCCATCAACGAACAACAACAATAACAACAAGCTCTCTTGTCTCAGTTCCATCCTTGTACAGCCATGAGGAACAAGCCCATCGAGCCATGGCATCATCATCATCATCCTCCTCAGCCAACATGTCAGCCACTGTGTTACTGCAAAAGGCTGCACAAATGGGAGTGACAAGCTCCACAACGACAGACCCATCATCATTAATGGCTAGTTTTGGCCTGAAATTTTATGGCTCAATGAACTCCAATCATGAAGACTCTGCTGGCAGTATGTACCAGCCTGCTGCAAAGAGAATGAGGCACAGTCTTAGTGAAGAAAGTGTCAATGGTGGACAAGGACAGACTAGGGATTTCTTGGGTGTGGGCATGCCCACCATATGCCACCCTGCATCCTCACCCAATGGATGGATCTGA 1272 43.47 MSEEQAASNAFICSLPSLGSNNNPPVVKKKRNLPGNPDPEAEVVALSPKTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRSNASKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHFKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAASTINNNNNNNNSFTTTAENNININNYNFLNTITNPHQYFPNSSNFFRPDHETFQMFLNNNNNSLTPTIGLPFWIPNPHQINPLHDDNDNDNNFHQRTTTITTSSLVSVPSLYSHEEQAHRAMASSSSSSSANMSATVLLQKAAQMGVTSSTTTDPSSLMASFGLKFYGSMNSNHEDSAGSMYQPAAKRMRHSLSEESVNGGQGQTRDFLGVGMPTICHPASSPNGWI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43076231 43080042 - Sed0022088.1 Sed04g3258 711861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3258 423 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Sed04g3258 423 FunFam protein indeterminate-domain 12-like 36 106 - -
Sed04g3258 423 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Sed04g3258 423 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
Sed04g3258 423 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Sed04g3258 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 411 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g3258 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Sed04g3258 423 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Sed04g3258 423 Gene3D Classic Zinc Finger 53 80 - -
Sed04g3258 423 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Sed04g3258 423 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Sed04g3258 423 Gene3D Classic Zinc Finger 93 183 - -
Sed04g3258 423 SMART c2h2final6 57 79 IPR013087 -
Sed04g3258 423 SMART c2h2final6 135 155 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3258 Sed-Chr4:43076231 Sed05g0941 Sed-Chr5:7602091 6.20E-96 dispersed
Sed04g3258 Sed-Chr4:43076231 Sed04g3259 Sed-Chr4:43076231 9.00E-196 tandem
Sed04g3258 Sed-Chr4:43076231 Sed05g2060 Sed-Chr5:33849322 3.30E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38319 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3258 K25870 - csv:101207997 546.199