Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3259 ATGGCGACGAACCGATTCTTGTGCGAGGTATGCGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGTTGAAGCAAAGAAGCAATGCAAGCAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCACCATCCTTCAAGAGCCCTTGGAGACCTAACAGGAATTAAAAAGCACTTTTGTAGGAAACATGGAGAGAAGAAGTGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTTTAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGACAGCTATGTAACTCACAGAGCATATTGTATGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCAACCATAAACAACAACAACAACAACAACAATTCATTCACAACCACAGCTGAAAACAACATCAACATCAACAATTACAATTTCCTAAACACCATCACAAATCCTCACCAATACTTCCCTAATTCCTCCAACTTTTTCAGACCAGATCATGAAACTTTCCAAATGTTCCTTAACAACAACAACAACTCTCTCACACCCACCATAGGCCTCCCCTTTTGGATTCCAAATCCCCACCAAATCAATCCGCTCCACGACGACAATGACAACGACAACAATTTCCATCAACGAACAACAACAATAACAACAAGCTCTCTTGTCTCAGTTCCATCCTTGTACAGCCATGAGGAACAAGCCCATCGAGCCATGGCATCATCATCATCATCCTCCTCAGCCAACATGTCAGCCACTGTGTTACTGCAAAAGGCTGCACAAATGGGAGTGACAAGCTCCACAACGACAGACCCATCATCATTAATGGCTAGTTTTGGCCTGAAATTTTATGGCTCAATGAACTCCAATCATGAAGACTCTGCTGGCAGTATGTACCAGCCTGCTGCAAAGAGAATGAGGCACAGTCTTAGTGAAGAAAGTGTCAATGGTGGACAAGGACAGACTAGGGATTTCTTGGGTGTGGGCATGCCCACCATATGCCACCCTGCATCCTCACCCAATGGATGGATCTGA 1119 43.52 MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRSNASKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHFKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAASTINNNNNNNNSFTTTAENNININNYNFLNTITNPHQYFPNSSNFFRPDHETFQMFLNNNNNSLTPTIGLPFWIPNPHQINPLHDDNDNDNNFHQRTTTITTSSLVSVPSLYSHEEQAHRAMASSSSSSSANMSATVLLQKAAQMGVTSSTTTDPSSLMASFGLKFYGSMNSNHEDSAGSMYQPAAKRMRHSLSEESVNGGQGQTRDFLGVGMPTICHPASSPNGWI 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43076231 43079206 - Sed0022088.2 Sed04g3259 711862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3259 372 SMART c2h2final6 84 104 IPR013087 -
Sed04g3259 372 SMART c2h2final6 6 28 IPR013087 -
Sed04g3259 372 SUPERFAMILY beta-beta-alpha zinc fingers 5 104 IPR036236 -
Sed04g3259 372 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 45 79 - -
Sed04g3259 372 Gene3D Classic Zinc Finger 40 132 - -
Sed04g3259 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Sed04g3259 372 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 360 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g3259 372 Gene3D Classic Zinc Finger 2 29 - -
Sed04g3259 372 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 110 149 - -
Sed04g3259 372 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sed04g3259 372 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 83 107 - -
Sed04g3259 372 FunFam protein indeterminate-domain 5, chloroplastic-like 62 141 - -
Sed04g3259 372 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3259 Sed-Chr4:43076231 Sed05g2060 Sed-Chr5:33849322 1.90E-125 dispersed
Sed04g3258 Sed-Chr4:43076231 Sed04g3259 Sed-Chr4:43076231 9.00E-196 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38320 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3259 K25870 - csv:101207997 473.396