Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3271 | ATGGCACAATTACCGCCCAAGATCCCAAACACGGCGCCTAATAATTGGCCGGAATTTCCTCGCATTGCACACACCACGGCGGCGCCGGTCACAACACACGGCCACAACAACCCTTCATGGGTCGACGAATTTCTAGATTTTTCCTCCGCCAGACGCGGCTCCCACCGCCGCTCCGTCAGCGATTCCATCACATTCCTCGAAATGCCGATGCTGGAAGACGATTGTCGGGGCTCCGCCTCCGCAGCGCCGCCGGACCGCCACGAATTCGACCGCTTCGACGACGACCAGTTCCTGTCCATGTTTAACGACGAAATCTCCGCCGCATCCACGCCGTCCGATCACAACAGCATTAACGACGAGAAAGACGCCAAGCCGAACCTGAACAAACACGAATCCGACGAAGCGCACAGCCACCGGCAATCGGAAACTCAAACTCCGTCCGATTCCACGGCGGCGGCGGCGGCGGAGGAGGCTTCCACCGATCGGATTACGGATCCTAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCGCAAAGATCAAGAGTGAGGAAGCTTCAATACATATCGGAACTGGAACGAAGCGTCACATCATTACAGGCTGAAGTATCGGTGCTGTCACCGCGAGTGGCGTTTTTGGACCAACAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTCAAGCAAAGAATCGCCGCCCTTGCACAAGACAAGATTTTCAAAGATGCTCATCAAGAGGCTCTAAAAAGAGAGATAGAGAGGCTGAGACAAGTATATCACCAACAAAGCATCAAGAAGATGGAAAACAATGCAGCGCTATCGTTACCGTCACCACCCGCTGCCGCCATGGACATTGCTATCGATGTGAAACTCCCGAATGTAGATCAAAAAGACCAAGTTTTAAACGTCGTCATTTAG | 921 | 52.88 | MAQLPPKIPNTAPNNWPEFPRIAHTTAAPVTTHGHNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEDDCRGSASAAPPDRHEFDRFDDDQFLSMFNDEISAASTPSDHNSINDEKDAKPNLNKHESDEAHSHRQSETQTPSDSTAAAAAEEASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDQQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQSIKKMENNAALSLPSPPAAAMDIAIDVKLPNVDQKDQVLNVVI | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 43142031 | 43145956 | + | Sed0008528.1 | Sed04g3271 | 711874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3271 | 306 | SUPERFAMILY | Leucine zipper domain | 167 | 221 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g3271 | 306 | Gene3D | - | 166 | 239 | - | - | |
Sed04g3271 | 306 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 275 | IPR052483 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER) | |
Sed04g3271 | 306 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 165 | 217 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g3271 | 306 | SMART | brlzneu | 163 | 227 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g3271 | 306 | FunFam | Basic leucine zipper 61 | 166 | 239 | - | - | |
Sed04g3271 | 306 | MobiDBLite | consensus disorder prediction | 107 | 169 | - | - | |
Sed04g3271 | 306 | Coils | Coil | 246 | 266 | - | - | |
Sed04g3271 | 306 | CDD | bZIP_plant_RF2 | 168 | 218 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g3271 | 306 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 170 | 185 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g3271 | 306 | MobiDBLite | consensus disorder prediction | 115 | 141 | - | - | |
Sed04g3271 | 306 | Pfam | Basic region leucine zipper | 164 | 214 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0510 | Sed-Chr1:3889432 | Sed04g3271 | Sed-Chr4:43142031 | 1.40E-49 | dispersed | |
Sed04g3271 | Sed-Chr4:43142031 | Sed05g2048 | Sed-Chr5:33729756 | 5.90E-88 | dispersed | |
Sed04g3271 | Sed-Chr4:43142031 | Sed04g3272 | Sed-Chr4:43142031 | 5.40E-142 | tandem | |
Sed04g3271 | Sed-Chr4:43142031 | Sed05g2047 | Sed-Chr5:33729756 | 5.90E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38321 | PF07716 | bZIP_2 | 2.10E-09 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3271 | - | - | - | 0.0 |