Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3271 ATGGCACAATTACCGCCCAAGATCCCAAACACGGCGCCTAATAATTGGCCGGAATTTCCTCGCATTGCACACACCACGGCGGCGCCGGTCACAACACACGGCCACAACAACCCTTCATGGGTCGACGAATTTCTAGATTTTTCCTCCGCCAGACGCGGCTCCCACCGCCGCTCCGTCAGCGATTCCATCACATTCCTCGAAATGCCGATGCTGGAAGACGATTGTCGGGGCTCCGCCTCCGCAGCGCCGCCGGACCGCCACGAATTCGACCGCTTCGACGACGACCAGTTCCTGTCCATGTTTAACGACGAAATCTCCGCCGCATCCACGCCGTCCGATCACAACAGCATTAACGACGAGAAAGACGCCAAGCCGAACCTGAACAAACACGAATCCGACGAAGCGCACAGCCACCGGCAATCGGAAACTCAAACTCCGTCCGATTCCACGGCGGCGGCGGCGGCGGAGGAGGCTTCCACCGATCGGATTACGGATCCTAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCGCAAAGATCAAGAGTGAGGAAGCTTCAATACATATCGGAACTGGAACGAAGCGTCACATCATTACAGGCTGAAGTATCGGTGCTGTCACCGCGAGTGGCGTTTTTGGACCAACAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTCAAGCAAAGAATCGCCGCCCTTGCACAAGACAAGATTTTCAAAGATGCTCATCAAGAGGCTCTAAAAAGAGAGATAGAGAGGCTGAGACAAGTATATCACCAACAAAGCATCAAGAAGATGGAAAACAATGCAGCGCTATCGTTACCGTCACCACCCGCTGCCGCCATGGACATTGCTATCGATGTGAAACTCCCGAATGTAGATCAAAAAGACCAAGTTTTAAACGTCGTCATTTAG 921 52.88 MAQLPPKIPNTAPNNWPEFPRIAHTTAAPVTTHGHNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEDDCRGSASAAPPDRHEFDRFDDDQFLSMFNDEISAASTPSDHNSINDEKDAKPNLNKHESDEAHSHRQSETQTPSDSTAAAAAEEASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDQQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQSIKKMENNAALSLPSPPAAAMDIAIDVKLPNVDQKDQVLNVVI 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43142031 43145956 + Sed0008528.1 Sed04g3271 711874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3271 306 SUPERFAMILY Leucine zipper domain 167 221 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3271 306 Gene3D - 166 239 - -
Sed04g3271 306 PANTHER BASIC LEUCINE ZIPPER 34 1 275 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Sed04g3271 306 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 217 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3271 306 SMART brlzneu 163 227 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3271 306 FunFam Basic leucine zipper 61 166 239 - -
Sed04g3271 306 MobiDBLite consensus disorder prediction 107 169 - -
Sed04g3271 306 Coils Coil 246 266 - -
Sed04g3271 306 CDD bZIP_plant_RF2 168 218 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3271 306 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 170 185 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3271 306 MobiDBLite consensus disorder prediction 115 141 - -
Sed04g3271 306 Pfam Basic region leucine zipper 164 214 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0510 Sed-Chr1:3889432 Sed04g3271 Sed-Chr4:43142031 1.40E-49 dispersed
Sed04g3271 Sed-Chr4:43142031 Sed05g2048 Sed-Chr5:33729756 5.90E-88 dispersed
Sed04g3271 Sed-Chr4:43142031 Sed04g3272 Sed-Chr4:43142031 5.40E-142 tandem
Sed04g3271 Sed-Chr4:43142031 Sed05g2047 Sed-Chr5:33729756 5.90E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38321 PF07716 bZIP_2 2.10E-09 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3271 - - - 0.0