Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3290 | ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGTACCAAAGAGTATGTTCATGTGCGCGTACAACAACGCAACGGTAGAAAAAGTCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTTAAAGACCTGAAGAAGGAATTTTGCTGTAATGGTACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAGCTTCAGGGAGATCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA | 342 | 42.11 | MSEFNVQIPSAFDPFADANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF | 113 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 43283102 | 43284798 | - | Sed0014793.1 | Sed04g3290 | 711893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3290 | 113 | SUPERFAMILY | eIF1-like | 4 | 113 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed04g3290 | 113 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 31 | 101 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed04g3290 | 113 | CDD | eIF1_SUI1 | 29 | 112 | IPR005874 | GO:0003743(InterPro) | |
Sed04g3290 | 113 | FunFam | Eukaryotic translation initiation factor SUI1 | 2 | 113 | - | - | |
Sed04g3290 | 113 | NCBIfam | translation initiation factor SUI1 | 6 | 113 | IPR005874 | GO:0003743(InterPro) | |
Sed04g3290 | 113 | PIRSF | Transl_init_SUI1_Euk | 1 | 113 | IPR005874 | GO:0003743(InterPro) | |
Sed04g3290 | 113 | Pfam | Translation initiation factor SUI1 | 28 | 102 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed04g3290 | 113 | Gene3D | - | 1 | 113 | - | - | |
Sed04g3290 | 113 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 1 | 113 | - | GO:0003723(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3290 | Sed-Chr4:43283102 | Sed04g3291 | Sed-Chr4:43288714 | 3.60E-59 | tandem | |
Sed07g2681 | Sed-Chr7:42206324 | Sed04g3290 | Sed-Chr4:43283102 | 1.80E-42 | transposed | |
Sed04g3290 | Sed-Chr4:43283102 | Sed05g2008 | Sed-Chr5:33341144 | 4.40E-57 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3290 | K03113 | - | csv:101219651 | 226.483 |