Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3290 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGTACCAAAGAGTATGTTCATGTGCGCGTACAACAACGCAACGGTAGAAAAAGTCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTTAAAGACCTGAAGAAGGAATTTTGCTGTAATGGTACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAGCTTCAGGGAGATCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA 342 42.11 MSEFNVQIPSAFDPFADANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43283102 43284798 - Sed0014793.1 Sed04g3290 711893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3290 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g3290 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g3290 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743(InterPro)
Sed04g3290 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Sed04g3290 113 NCBIfam translation initiation factor SUI1 6 113 IPR005874 GO:0003743(InterPro)
Sed04g3290 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743(InterPro)
Sed04g3290 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g3290 113 Gene3D - 1 113 - -
Sed04g3290 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - GO:0003723(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3290 Sed-Chr4:43283102 Sed04g3291 Sed-Chr4:43288714 3.60E-59 tandem
Sed07g2681 Sed-Chr7:42206324 Sed04g3290 Sed-Chr4:43283102 1.80E-42 transposed
Sed04g3290 Sed-Chr4:43283102 Sed05g2008 Sed-Chr5:33341144 4.40E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3290 K03113 - csv:101219651 226.483