Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3291 ATGTCTGAATTCAACGTGCAGGTTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGTACCAAAGAGTATGTTCATGTGCGCGTACAACAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTTAAAGATTTGAAGAAGGAATTTTGCTGCAATGGCACGGTTGTGCAAGATCCTGAGTTAGGACAGGTTATACAACTTCAAGGAGACCAAAGGAAGAATGTGTCTACCTTCCTTGTGCAGGCGGGGATTGCGAAGAAGGAAAATATCAAGATGCACGGTTTCTAG 342 43.57 MSEFNVQVPSAFDPFADANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIAKKENIKMHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43288714 43291142 - Sed0015673.1 Sed04g3291 711894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3291 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743(InterPro)
Sed04g3291 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Sed04g3291 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g3291 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743(InterPro)
Sed04g3291 113 Gene3D - 1 113 - -
Sed04g3291 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - GO:0003723(PANTHER)
Sed04g3291 113 NCBIfam translation initiation factor SUI1 6 113 IPR005874 GO:0003743(InterPro)
Sed04g3291 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g3291 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3291 Sed-Chr4:43288714 Sed05g2008 Sed-Chr5:33341144 8.90E-58 dispersed
Sed04g3290 Sed-Chr4:43283102 Sed04g3291 Sed-Chr4:43288714 3.60E-59 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3291 K03113 - csv:101219651 223.402