Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g3293 | ATGGCCATTAGCCCAAAGCTCTTGTCCCTCCTCTTTCTGCAGCTAATGCTTGTATCCTCTCTCCCGAACATTGCCGAAGCGTATGGACGTCGTAGGGGTTTGGCGGTCGGGTTTTATCGGTACAGCTGCCCGGGGTTGGAGTATACCGTTGCCAAAACGGTGGCTGCATATATTAAGAAACAACCTACTCTAGCTGCCTCTTTGTTGAGGATGCACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTGATAAATTCGTCGCCAAAAAACCAAGCTGAGAAAGATTCCATTCCCAACCTTAGCTTAAAGGGTTACAATGTCGTCGACGATGTTAAAGCGGCCCTTGAAAAGCAATGCCCAGGAGTCGTTTCATGTGCTGATATCCTCACTTTGGTAGCTCGTGATGCCGTTAGAATGATTGGAGGTCCATGGTGGGAAGTTCCCACAGGAAGAAGAGACGGAACCGTTTCAATGGCACAAGAGGCATTGACCAATTTGCCCCCGCCCTTCGCCAACATCTCAACGCTCATTACAAGTTTCCAATCCAAGGGCCTTTCCGTCAAAGACCTCGTCGTTTTATCAGCGTATGGACATCATCGTGGTTTGGCGGTCGGGTATTATCGGTACAGCTGCCCGGTGTTGGAGTATACCGTTGCCAAAACGGGTTGTGATGGTTCTGTGCTGATAAATTCGACGCCAAAAAACCAAGCCGAGAAAGATTCCCCTCCCAACCTTAGTTTAAAGGGTTACAACGTCATCGATGCCGTTAAAGCCGCACTCGAAAAGCAGTGTCCGGGCGTCGTGTCATGTGCCGATATCCTCACTTTGGTAGCTCGGGATGCCGTTAGAATGATTGGAGGGCCATGGTGGGAAGTTCCAACAGGGAGAAGAGACGGAACCGTTTCAATCGCACAAGAGGCATTGACCAATTTGCCCCCACCCTTCGCCAACATCTCAACGCTCATTACAAGTTTCCAATCCAAGGGCCTTTCCGTCAAAGACCTCGTCGTTTTATCAGGAGCGCACACGATCGGAGTCTCTCACTGCACCTTCTTCTCCAACCGCCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCGAAATTGGACAAGTACTACGCCGTCGCACTGAGGAAGAAATGCAAGCCAAACGACCAGAAAACCACCGTCGAGATGGATCCGGGAAGCTTCAAGCGCTTCGATGAAGGCTACTACGCTCAGGTCTCCAAGAGAAGAGGACTGTTCCAGTCCGATTCCGCCCTGCTCGACCATCTTGAAACCAGAGGCTACGTTCAGCTTCAAGCTCTGACTCACGGCTCCACTTTCGCCGCCGATTTCGCCGAATCGATGCTCAAGATGGGACAGATCGACGTCCTCACCGGCGCCGACGGCCAAATTAGGCGTCGCTGTGCTTTTGTTAACTGA | 1434 | 51.32 | MAISPKLLSLLFLQLMLVSSLPNIAEAYGRRRGLAVGFYRYSCPGLEYTVAKTVAAYIKKQPTLAASLLRMHFHDCFVRGCDGSVLINSSPKNQAEKDSIPNLSLKGYNVVDDVKAALEKQCPGVVSCADILTLVARDAVRMIGGPWWEVPTGRRDGTVSMAQEALTNLPPPFANISTLITSFQSKGLSVKDLVVLSAYGHHRGLAVGYYRYSCPVLEYTVAKTGCDGSVLINSTPKNQAEKDSPPNLSLKGYNVIDAVKAALEKQCPGVVSCADILTLVARDAVRMIGGPWWEVPTGRRDGTVSIAQEALTNLPPPFANISTLITSFQSKGLSVKDLVVLSGAHTIGVSHCTFFSNRLYNFTGKGDADPKLDKYYAVALRKKCKPNDQKTTVEMDPGSFKRFDEGYYAQVSKRRGLFQSDSALLDHLETRGYVQLQALTHGSTFAADFAESMLKMGQIDVLTGADGQIRRRCAFVN | 477 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 43300867 | 43310044 | + | Sed0003682.1 | Sed04g3293 | 711896 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g3293 | 477 | FunFam | Peroxidase | 224 | 330 | - | - | |
| Sed04g3293 | 477 | SUPERFAMILY | Heme-dependent peroxidases | 205 | 477 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Haem peroxidase superfamily signature | 126 | 143 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Haem peroxidase superfamily signature | 65 | 79 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Haem peroxidase superfamily signature | 144 | 156 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Haem peroxidase superfamily signature | 396 | 411 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | Pfam | Peroxidase | 224 | 436 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | Pfam | Peroxidase | 50 | 198 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | CDD | secretory_peroxidase | 33 | 476 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Sed04g3293 | 477 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 337 | 347 | IPR019793 | - | |
| Sed04g3293 | 477 | Gene3D | - | 34 | 185 | - | - | |
| Sed04g3293 | 477 | FunFam | Peroxidase | 37 | 180 | - | - | |
| Sed04g3293 | 477 | SUPERFAMILY | Heme-dependent peroxidases | 34 | 202 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | FunFam | Peroxidase | 315 | 456 | - | - | |
| Sed04g3293 | 477 | Gene3D | Peroxidase, domain 2 | 315 | 456 | - | - | |
| Sed04g3293 | 477 | ProSitePatterns | Peroxidases active site signature. | 65 | 76 | IPR019794 | GO:0004601(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Plant peroxidase signature | 67 | 87 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Plant peroxidase signature | 125 | 135 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Plant peroxidase signature | 106 | 119 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Plant peroxidase signature | 144 | 159 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PRINTS | Plant peroxidase signature | 43 | 62 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | ProSiteProfiles | Plant heme peroxidase family profile. | 33 | 477 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | PANTHER | PEROXIDASE 25-RELATED | 224 | 473 | IPR000823 | GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro) | |
| Sed04g3293 | 477 | Gene3D | - | 224 | 477 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3293 | Sed-Chr4:43300867 | Sed09g0320 | Sed-Chr9:2899926 | 6.20E-68 | dispersed | |
| Sed10g0374 | Sed-Chr10:2256507 | Sed04g3293 | Sed-Chr4:43300867 | 1.10E-56 | wgd | |
| Sed04g3293 | Sed-Chr4:43300867 | Sed05g3076 | Sed-Chr5:41042886 | 2.40E-80 | wgd | |
| Sed04g3293 | Sed-Chr4:43300867 | Sed05g2006 | Sed-Chr5:33317271 | 2.40E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g3293 | K00430 | - | csv:101219177 | 434.876 |