Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3293 ATGGCCATTAGCCCAAAGCTCTTGTCCCTCCTCTTTCTGCAGCTAATGCTTGTATCCTCTCTCCCGAACATTGCCGAAGCGTATGGACGTCGTAGGGGTTTGGCGGTCGGGTTTTATCGGTACAGCTGCCCGGGGTTGGAGTATACCGTTGCCAAAACGGTGGCTGCATATATTAAGAAACAACCTACTCTAGCTGCCTCTTTGTTGAGGATGCACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTGATAAATTCGTCGCCAAAAAACCAAGCTGAGAAAGATTCCATTCCCAACCTTAGCTTAAAGGGTTACAATGTCGTCGACGATGTTAAAGCGGCCCTTGAAAAGCAATGCCCAGGAGTCGTTTCATGTGCTGATATCCTCACTTTGGTAGCTCGTGATGCCGTTAGAATGATTGGAGGTCCATGGTGGGAAGTTCCCACAGGAAGAAGAGACGGAACCGTTTCAATGGCACAAGAGGCATTGACCAATTTGCCCCCGCCCTTCGCCAACATCTCAACGCTCATTACAAGTTTCCAATCCAAGGGCCTTTCCGTCAAAGACCTCGTCGTTTTATCAGCGTATGGACATCATCGTGGTTTGGCGGTCGGGTATTATCGGTACAGCTGCCCGGTGTTGGAGTATACCGTTGCCAAAACGGGTTGTGATGGTTCTGTGCTGATAAATTCGACGCCAAAAAACCAAGCCGAGAAAGATTCCCCTCCCAACCTTAGTTTAAAGGGTTACAACGTCATCGATGCCGTTAAAGCCGCACTCGAAAAGCAGTGTCCGGGCGTCGTGTCATGTGCCGATATCCTCACTTTGGTAGCTCGGGATGCCGTTAGAATGATTGGAGGGCCATGGTGGGAAGTTCCAACAGGGAGAAGAGACGGAACCGTTTCAATCGCACAAGAGGCATTGACCAATTTGCCCCCACCCTTCGCCAACATCTCAACGCTCATTACAAGTTTCCAATCCAAGGGCCTTTCCGTCAAAGACCTCGTCGTTTTATCAGGAGCGCACACGATCGGAGTCTCTCACTGCACCTTCTTCTCCAACCGCCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCGAAATTGGACAAGTACTACGCCGTCGCACTGAGGAAGAAATGCAAGCCAAACGACCAGAAAACCACCGTCGAGATGGATCCGGGAAGCTTCAAGCGCTTCGATGAAGGCTACTACGCTCAGGTCTCCAAGAGAAGAGGACTGTTCCAGTCCGATTCCGCCCTGCTCGACCATCTTGAAACCAGAGGCTACGTTCAGCTTCAAGCTCTGACTCACGGCTCCACTTTCGCCGCCGATTTCGCCGAATCGATGCTCAAGATGGGACAGATCGACGTCCTCACCGGCGCCGACGGCCAAATTAGGCGTCGCTGTGCTTTTGTTAACTGA 1434 51.32 MAISPKLLSLLFLQLMLVSSLPNIAEAYGRRRGLAVGFYRYSCPGLEYTVAKTVAAYIKKQPTLAASLLRMHFHDCFVRGCDGSVLINSSPKNQAEKDSIPNLSLKGYNVVDDVKAALEKQCPGVVSCADILTLVARDAVRMIGGPWWEVPTGRRDGTVSMAQEALTNLPPPFANISTLITSFQSKGLSVKDLVVLSAYGHHRGLAVGYYRYSCPVLEYTVAKTGCDGSVLINSTPKNQAEKDSPPNLSLKGYNVIDAVKAALEKQCPGVVSCADILTLVARDAVRMIGGPWWEVPTGRRDGTVSIAQEALTNLPPPFANISTLITSFQSKGLSVKDLVVLSGAHTIGVSHCTFFSNRLYNFTGKGDADPKLDKYYAVALRKKCKPNDQKTTVEMDPGSFKRFDEGYYAQVSKRRGLFQSDSALLDHLETRGYVQLQALTHGSTFAADFAESMLKMGQIDVLTGADGQIRRRCAFVN 477
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 43300867 43310044 + Sed0003682.1 Sed04g3293 711896
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3293 477 FunFam Peroxidase 224 330 - -
Sed04g3293 477 SUPERFAMILY Heme-dependent peroxidases 205 477 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Haem peroxidase superfamily signature 65 79 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Haem peroxidase superfamily signature 396 411 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 Pfam Peroxidase 224 436 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 Pfam Peroxidase 50 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 CDD secretory_peroxidase 33 476 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed04g3293 477 ProSitePatterns Peroxidases proximal heme-ligand signature. 337 347 IPR019793 -
Sed04g3293 477 Gene3D - 34 185 - -
Sed04g3293 477 FunFam Peroxidase 37 180 - -
Sed04g3293 477 SUPERFAMILY Heme-dependent peroxidases 34 202 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 FunFam Peroxidase 315 456 - -
Sed04g3293 477 Gene3D Peroxidase, domain 2 315 456 - -
Sed04g3293 477 ProSitePatterns Peroxidases active site signature. 65 76 IPR019794 GO:0004601(InterPro)
Sed04g3293 477 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 ProSiteProfiles Plant heme peroxidase family profile. 33 477 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed04g3293 477 PANTHER PEROXIDASE 25-RELATED 224 473 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed04g3293 477 Gene3D - 224 477 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3293 Sed-Chr4:43300867 Sed09g0320 Sed-Chr9:2899926 6.20E-68 dispersed
Sed10g0374 Sed-Chr10:2256507 Sed04g3293 Sed-Chr4:43300867 1.10E-56 wgd
Sed04g3293 Sed-Chr4:43300867 Sed05g3076 Sed-Chr5:41042886 2.40E-80 wgd
Sed04g3293 Sed-Chr4:43300867 Sed05g2006 Sed-Chr5:33317271 2.40E-80 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3293 K00430 - csv:101219177 434.876