Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3313 ATGTGTCAGGATTTGATGTTTGGTTTCCTTCTATACTCATTTGTGTTTTTTATTCCTGTTGTTAACAGCTTTGCTAAAGACATTTTAGAGTTCAAAAGCTGCATAAGTGATGAAAGAGGGGATACGCTTGTATCGGCAGGATCGAGATTCGAACTCGGATTTTTTACACCATATGGCAGCTCTGATAACAGAAGGTATGTGGGAATATGGTATTACAAATCAATTCCAAGTACAGTTGTTTGGGTTGCCAATTCAGGCAGGCCACTTGTTGGTAAAGATGGTATCTTTAAAATTGGGGATGATGGCAACCTCAAAGTATTTGATGGAAACCAAAACCTGTATTGGTCAACTAACATTGGCAGTTCTGTTCACAATCACATGAATTTAAAGCTAATGGATAATGGAAATCTGGTTTTTAGTCATGAAGATGAAGAAGACTTGTCTGATTCAATCCTTTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCAGGCATGGTAATGGATGACAACTTAGTGTTGACTTCATGGCAGAGCTATGACAACCCAGCTCAAGGAAACTTCACTTTTCAGCTAGATCAAGATGGGGGCCAATTTGTCATTTGGAATAGATCAGTTAAATACTGGAAAAGTGGAGTTTCAGGTAAGTTCATTACAACTGATAAGATGCCTGCTGCATTGCTATACCTTCTGTCCAATTTCTCATCAAAAGCTGCCCCAAACTTCTCTGTCCCACATCTCACACCATCATTGTATATTGATACAAGGCTAGTAATGAACAGCTCAGGTCAGCTCCAATATCTGAACTGGGAGGATCATAAAGTATGGTCTGAGATTTGGGTGGAGCCAAGAGATAGGTGCAGTGTATATAATGTGTGCGGCGATTTTGCTAGCTGTAATAGTAAGGGTGGTATGGCTTGCAAATGCCTGCCTGGTTTCGAGCCTACCTCTTCGGCTAGTTGGATCGTTGGAGATTATTCGGGTGGATGCATTAGGAAGTCGCCGATATGCGGTGTCGACAATGATAGCGACACGTTTTGTAGTCTAAAATTGATGAAAGCTGGAAACCCTGACTTTCAATTCAATGCAAAGGATGACTTTGATTGCAAATTGGAGTGCCTTAACAACTGCCAGTGTCAGGCTTATGCATATGTAGAAGCTGATATCATAAGGCAGGGTAGGATTGATAATTCTGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGATGAGTTTGATGGTGGCCGTGACCTCAATGTGCGAGTTGCGGTTCAAGATCTAGGATCGACGATCAGAAATTGTGAAACATGTGGCACAAACCTCATTCCTTATCCACTTAGCACAGGACCTAAATGTGGTGACCCAATGTACTTCAATTTTAACTGCAATTTGACTACTGGCCAGGTATACTTTGAAGCAGCAGGTGAAATGTACAAGGTTAAATTCATTGATTCTGAAGCTCAGAAATTTATCATTCAAACCAAGGAAGCTGGTGATTGTGGTGACAAAAATTGGATAAACAAAACCCTTCAGCTGAATCAGTCATCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGATCAAGAGAATTTTTCTCCAGAAACCAGCAATGAAGTTGAAATCAGTTGGGAGCCACCATTAGAACCGACTTGTTCCTCGACTACGGACTGCGAAAACTGGCCTTATTCAACCTGCAACATGAGTAGAGATGGAAACAAAAGATGCCTTTGCATAAGGAACTTCCATTGGAATGGCTGGAGCTTGAATTGCACTGCAGATCACAACAAAGAAAAGGATGAAAGACGCAAGGCGACGCTCTCCATGATTATTGTTGCGACATCCATATGTGTGGTCTTTCTGATGATTCTATCATGTACTGTGTTTTATATTTACTTCTTCAAAACCAGGCGCATTGACAGGCAAGAAAGCAGGGGAAACAGCCAAAAAGACTTGCTTCACTTGTATGACAACAATAGGCGTGTCAAAGGCCTGATCGAATCCGGTCGATTCAAGGAAGATGACACAAATGGAATAGACATTCCATTTTTTGATTTGGAAACAATTCTATTGGCAACAGAAAACTTTTCAAATGCAAATAAGCTTGGACAGGGAGGTTTTGGGCCAGTGTACAAGGGAAAGTTTCCTAATGGACATGAGATTGCTGTAAAGAGGCTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTGTTAATCGCAAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTATGAATATATGCCAAACAAAAGCTTGGATGTCTTTATATTCGATCAAAAGCTAAGGGTGGCATTGGATTGGGATGTGCGCTTCAACGTCATCTTAGGAATTGCTCGTGGCCTTCTTTACCTACACCAAGATTCAAGGTTGAGAATCATTCATAGAGATTTGAAGACAAGCAACATTCTTCTGGATGAAGAGATGAATCCCAAAATATCTGACTTTGGCTTGGCAAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAGAAGGGTGGTAGGGACATATGGATACATGTCACCAGAATACGCATTGGACGGCATATTTTCTGTCAAATCTGATGTCTTTAGCTTTGGTGTAGTCGTAATCGAGATGATTAGTGGAAAAAGGAACACTGGATTCTACCACTCGGAGAAAGCTTTGAGTCTTCTTGGCTATGCTTGGGATTTGTGGATGAAAGATGAAGGCTTTGATTTGATGGAGCAAACACTAAGTCAGAATTGCAAAAGAGATGAGTATTTGAAGTGTTTAAATGTGGGGCTGTTGTGCGTGCAGGAAGATCCATGGGATCGACCAACCATGTCGAATGTGATCTTCATGCTTGGCTGTGAAACTGCAACTCTTCCATCTCCGAAACAACCGGCATTCGTGCGGCGGTGCCCTTCGAGCAGAGCTTCTTCTTCCACTAAACCAGAAACCTATTCCCATAATGAGTTGACAGTCACCTTAAAAGAAGGTAGATAG 3051 41.46 MCQDLMFGFLLYSFVFFIPVVNSFAKDILEFKSCISDERGDTLVSAGSRFELGFFTPYGSSDNRRYVGIWYYKSIPSTVVWVANSGRPLVGKDGIFKIGDDGNLKVFDGNQNLYWSTNIGSSVHNHMNLKLMDNGNLVFSHEDEEDLSDSILWQSFDYPTDTFLPGMVMDDNLVLTSWQSYDNPAQGNFTFQLDQDGGQFVIWNRSVKYWKSGVSGKFITTDKMPAALLYLLSNFSSKAAPNFSVPHLTPSLYIDTRLVMNSSGQLQYLNWEDHKVWSEIWVEPRDRCSVYNVCGDFASCNSKGGMACKCLPGFEPTSSASWIVGDYSGGCIRKSPICGVDNDSDTFCSLKLMKAGNPDFQFNAKDDFDCKLECLNNCQCQAYAYVEADIIRQGRIDNSACWIWSGDLNNLQDEFDGGRDLNVRVAVQDLGSTIRNCETCGTNLIPYPLSTGPKCGDPMYFNFNCNLTTGQVYFEAAGEMYKVKFIDSEAQKFIIQTKEAGDCGDKNWINKTLQLNQSSPFHVTSWCNFKDQENFSPETSNEVEISWEPPLEPTCSSTTDCENWPYSTCNMSRDGNKRCLCIRNFHWNGWSLNCTADHNKEKDERRKATLSMIIVATSICVVFLMILSCTVFYIYFFKTRRIDRQESRGNSQKDLLHLYDNNRRVKGLIESGRFKEDDTNGIDIPFFDLETILLATENFSNANKLGQGGFGPVYKGKFPNGHEIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDVFIFDQKLRVALDWDVRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTRRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEMISGKRNTGFYHSEKALSLLGYAWDLWMKDEGFDLMEQTLSQNCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVIFMLGCETATLPSPKQPAFVRRCPSSRASSSTKPETYSHNELTVTLKEGR 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43400275 43404915 - Sed0016677.1 Sed04g3313 711916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3313 1016 CDD STKc_IRAK 705 970 - -
Sed04g3313 1016 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 183 IPR036426 -
Sed04g3313 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3313 1016 Pfam D-mannose binding lectin 78 173 IPR001480 -
Sed04g3313 1016 ProSiteProfiles Bulb-type lectin domain profile. 28 152 IPR001480 -
Sed04g3313 1016 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544(InterPro)
Sed04g3313 1016 Gene3D Transferase(Phosphotransferase) domain 1 775 977 - -
Sed04g3313 1016 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 33 983 - -
Sed04g3313 1016 SMART blect_4 32 159 IPR001480 -
Sed04g3313 1016 ProSiteProfiles Protein kinase domain profile. 699 985 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3313 1016 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 664 774 - -
Sed04g3313 1016 ProSiteProfiles PAN/Apple domain profile. 338 426 IPR003609 -
Sed04g3313 1016 Gene3D - 27 156 IPR036426 -
Sed04g3313 1016 CDD PAN_AP_plant 338 426 - -
Sed04g3313 1016 Gene3D Phosphorylase Kinase; domain 1 668 774 - -
Sed04g3313 1016 Pfam PAN-like domain 338 410 IPR003609 -
Sed04g3313 1016 SMART serkin_6 699 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3313 1016 SUPERFAMILY Protein kinase-like (PK-like) 684 998 IPR011009 -
Sed04g3313 1016 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 775 978 - -
Sed04g3313 1016 Pfam Protein tyrosine and serine/threonine kinase 702 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3313 1016 CDD B_lectin 40 159 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3313 Sed-Chr4:43400275 Sed05g3098 Sed-Chr5:41191956 6.00E-254 dispersed
Sed04g3313 Sed-Chr4:43400275 Sed04g3314 Sed-Chr4:43400275 0.00E+00 tandem
Sed01g1725 Sed-Chr1:12558296 Sed04g3313 Sed-Chr4:43400275 3.30E-96 transposed
Sed10g0345 Sed-Chr10:2118971 Sed04g3313 Sed-Chr4:43400275 2.90E-164 wgd
Sed14g1388 Sed-Chr14:22629481 Sed04g3313 Sed-Chr4:43400275 3.10E-163 wgd
Sed04g3313 Sed-Chr4:43400275 Sed05g3097 Sed-Chr5:41181144 7.80E-246 wgd
Sed04g3313 Sed-Chr4:43400275 Sed08g2330 Sed-Chr8:36669883 1.90E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79080 PF07714 PK_Tyr_Ser-Thr 5.00E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3313 - - - 0.0