Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3334 ATGGGTTGGAATTGCAATTTGAGGATCTGTGCGCAGGTTTTAGTTGGATTCGTGATCTGCACAGCACAAGTTCTTTTGGGAATTACGAATCCAGGAGATTTTGCTGCTATTAGTAGCTTTCATACCGCACTGGGACTCCCCAGCCTTCCTGGATGGGGCACTGGCCAAGACCCATGTGGAGATGCATGGCAGGGTGTTGAATGCAATGATTCAAACATCATTAAAATAGTTATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGTATGTTTTCTTCAATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAGTTTACCCATTACCATGCAGAACTTATTTCTTTCAGCTAATGAGTTCACTGGAAGCATTCCAAGTTCCATATCATCTTTGACTCAATTGTCAGCCATGTCGTTGAATTATAACAAATTAAGTGGAGAATTACCAGATTCCTTCGAAAGCATTACTCAATTGGTCAATTTCGACTTATCCAATAACAACTTGAGTGGGGTTCTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAGCTATCAGGGACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTAATGGACCCATACCTGAGAAGTTGCTGACTATCCCTACTCTTAGAAAGGATGGAAATCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTTCTGTATCTCAACCACCATCACCACCACCACCACCATTACCATCAAAGCCAGCACAAACACCACCAGTTTCTGAAGCACCACCATCATCTCAACAAAAACCTAAGAAACATGCTGATGGACCTTCCGCACCTGAGGAATCAAGCACTGGAAGAAATAAGAAAAGCACCAAGAGGGTTGTTTTGATAACACTTGCAGCTGTATTGTCGTTCATAATCTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGCTGCAGAAGGAGAACAGTTGATAGTAATTCCAGGCGACATCATCAGATAGGTGCTTATAGAAGTGAGAGACAGAATGCTGGAAATGAGGGATCCATGCATCATCCAATTGATCAGATACCTAAAGTTCCAAAAGAGGCAGTAGTAAAGCCGAAGCAGGAAACTCAAACGGAGACTCAGAAAGTTCCAAAAGCTCATGAAGAGAAAGGGAGAAACATGGCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTTGATGTATATCTAATGCCACCTCCTCCGCCGCCTCCACCGCCCCCTCCACCACCACCTCCTGTTGAAGTGGTCACTGCTGTACCCACCATTCCAGCCGAAGTTCCTCCCTTGAAACCTCCCACCAAACATAAAATTACCTCAACTACTGCAAAATCTTTCACCATTGCGTCCCTTCAGCAATATACAAACAGTTTTTCACAAGAGAACCTTCTAGGAGATGGAACGCTGGGGAGGGTTTATAGGGCACAGCTTCCGAGTGGGAAGCTATGGGCCGTCAAGAAAATGGATAAAAGAGCATTCAGTGAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCATAGGTTACTGTGCTGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTAGTGGAACATTGCAGGATGCACTGCACACAGACAAAGAGTTCAGAAAGAAACTTTCTTGGAATGCCCGAATTAGAATGGCTCTTGGGGCTGCTAGAGCTTTGGAGTATTTGCATGAAGTCTGTCAGCCACCCATTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCGGACTGTGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATACGGTTATGGAGCGCCGGAATTTGAATCAGGAGTTTACACACTTGAGAGTGATGTTTACAGCTTTGGTGTGGTTATGCTGGAACTTCTGACTGGCCGGATGTCTTATGACAGAACAAGGACCCGGGGTGAGCAATTTCTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCGTACTTTGCCGACATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGACGGTTGTTCAGGACTTGTTCAACATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGATTGA 2352 43.66 MGWNCNLRICAQVLVGFVICTAQVLLGITNPGDFAAISSFHTALGLPSLPGWGTGQDPCGDAWQGVECNDSNIIKIVINAANLGGELGDNLGMFSSIQTIDLSNNHIGGSIPSSLPITMQNLFLSANEFTGSIPSSISSLTQLSAMSLNYNKLSGELPDSFESITQLVNFDLSNNNLSGVLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFNGPIPEKLLTIPTLRKDGNPFNSSVSPTSPPSVSQPPSPPPPPLPSKPAQTPPVSEAPPSSQQKPKKHADGPSAPEESSTGRNKKSTKRVVLITLAAVLSFIILVLACVLFMPSCRRRTVDSNSRRHHQIGAYRSERQNAGNEGSMHHPIDQIPKVPKEAVVKPKQETQTETQKVPKAHEEKGRNMARMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPVEVVTAVPTIPAEVPPLKPPTKHKITSTTAKSFTIASLQQYTNSFSQENLLGDGTLGRVYRAQLPSGKLWAVKKMDKRAFSEQKDDEFLELVNNIDRIRHANVVELIGYCAEHGERLLIYEYCSSGTLQDALHTDKEFRKKLSWNARIRMALGAARALEYLHEVCQPPIIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLFNMIRREPHGSGSSED 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43547355 43555962 - Sed0016135.2 Sed04g3334 711937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3334 783 MobiDBLite consensus disorder prediction 253 282 - -
Sed04g3334 783 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515(InterPro)
Sed04g3334 783 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Sed04g3334 783 Pfam Leucine Rich Repeat 120 140 IPR001611 GO:0005515(InterPro)
Sed04g3334 783 PANTHER LEUCINE RICH REPEAT KINASE 2 71 767 IPR051420 -
Sed04g3334 783 ProSiteProfiles Protein kinase domain profile. 493 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3334 783 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 462 570 - -
Sed04g3334 783 MobiDBLite consensus disorder prediction 387 407 - -
Sed04g3334 783 SUPERFAMILY Protein kinase-like (PK-like) 468 768 IPR011009 -
Sed04g3334 783 Gene3D Ribonuclease Inhibitor 33 257 IPR032675 -
Sed04g3334 783 Pfam Protein tyrosine and serine/threonine kinase 496 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3334 783 SUPERFAMILY L domain-like 46 238 - -
Sed04g3334 783 Gene3D Transferase(Phosphotransferase) domain 1 572 775 - -
Sed04g3334 783 MobiDBLite consensus disorder prediction 236 308 - -
Sed04g3334 783 Gene3D Phosphorylase Kinase; domain 1 464 570 - -
Sed04g3334 783 MobiDBLite consensus disorder prediction 345 374 - -
Sed04g3334 783 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
Sed04g3334 783 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 571 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3334 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3334 Sed-Chr4:43547355 Sed05g1967 Sed-Chr5:32996184 1.60E-291 dispersed
Sed04g3333 Sed-Chr4:43547355 Sed04g3334 Sed-Chr4:43547355 0.00E+00 tandem
Sed04g3334 Sed-Chr4:43547355 Sed04g3335 Sed-Chr4:43547355 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g3333 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3334 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3335 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed05g1967 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed05g1968 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed14g1427 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed14g1428 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed01g1999 . 276 604 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2000 . 253 581 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2001 . 225 553 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed04g2358 . 382 689 Strubbelig Receptor Gene Family AT4G03390 55.0 5.5e-90 330.1
Sed02g0342 . 17 734 Strubbelig Receptor Gene Family AT5G06820 51.7 6.8e-175 612.1
Sed03g1214 . 23 693 Strubbelig Receptor Gene Family AT1G78980 63.2 6.9e-193 671.8
Sed11g1725 . 10 665 Strubbelig Receptor Gene Family AT1G78980 57.6 4.1e-177 619.4
Sed06g2277 . 31 714 Strubbelig Receptor Gene Family AT1G78980 51.3 1.4e-148 524.6
Sed06g2278 . 67 744 Strubbelig Receptor Gene Family AT1G78980 51.5 2.0e-147 520.8
Sed06g2279 . 1 673 Strubbelig Receptor Gene Family AT1G78980 51.2 2.4e-145 513.8
Sed04g2358 . 29 692 Strubbelig Receptor Gene Family AT1G78980 52.1 4.3e-126 449.9
Sed01g1999 . 289 612 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2000 . 266 589 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2001 . 238 561 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed03g1214 . 2 671 Strubbelig Receptor Gene Family AT3G13065 53.8 6.4e-143 505.8
Sed11g1725 . 5 655 Strubbelig Receptor Gene Family AT3G13065 50.6 4.0e-137 486.5
Sed01g1999 . 299 590 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2000 . 276 567 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2001 . 248 539 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed04g3333 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3334 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3335 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed01g1998 . 391 684 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g1999 . 297 590 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g2000 . 274 567 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g2001 . 246 539 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed08g1942 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.2e-83 308.9
Sed02g0342 . 17 734 Strubbelig Receptor Gene Family AT5G06820 51.7 6.8e-175 612.1
Sed04g3333 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3334 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3335 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed05g1967 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed05g1968 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed14g1427 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed14g1428 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed01g1999 . 276 604 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2000 . 253 581 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2001 . 225 553 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed04g2358 . 382 689 Strubbelig Receptor Gene Family AT4G03390 55.0 5.5e-90 330.1
Sed03g1214 . 2 671 Strubbelig Receptor Gene Family AT3G13065 53.8 6.4e-143 505.8
Sed11g1725 . 5 655 Strubbelig Receptor Gene Family AT3G13065 50.6 4.0e-137 486.5
Sed01g1999 . 299 590 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2000 . 276 567 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2001 . 248 539 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed04g3333 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3334 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3335 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed03g1214 . 23 693 Strubbelig Receptor Gene Family AT1G78980 63.2 6.9e-193 671.8
Sed11g1725 . 10 665 Strubbelig Receptor Gene Family AT1G78980 57.6 4.1e-177 619.4
Sed06g2277 . 31 714 Strubbelig Receptor Gene Family AT1G78980 51.3 1.4e-148 524.6
Sed06g2278 . 67 744 Strubbelig Receptor Gene Family AT1G78980 51.5 2.0e-147 520.8
Sed06g2279 . 1 673 Strubbelig Receptor Gene Family AT1G78980 51.2 2.4e-145 513.8
Sed04g2358 . 29 692 Strubbelig Receptor Gene Family AT1G78980 52.1 4.3e-126 449.9
Sed01g1999 . 289 612 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2000 . 266 589 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2001 . 238 561 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed06g2277 . 1 707 Strubbelig Receptor Gene Family AT1G53730 61.3 1.8e-212 736.9
Sed06g2278 . 67 737 Strubbelig Receptor Gene Family AT1G53730 63.0 3.9e-207 719.2
Sed06g2279 . 1 666 Strubbelig Receptor Gene Family AT1G53730 62.8 4.7e-205 712.2
Sed04g2358 . 4 714 Strubbelig Receptor Gene Family AT1G53730 60.7 2.2e-186 650.2
Sed03g1214 . 2 679 Strubbelig Receptor Gene Family AT1G53730 52.3 2.9e-154 543.5
Sed01g2000 . 268 590 Strubbelig Receptor Gene Family AT1G53730 64.6 6.6e-114 409.5
Sed01g2001 . 240 562 Strubbelig Receptor Gene Family AT1G53730 64.6 6.6e-114 409.5
Sed06g2277 . 19 711 Strubbelig Receptor Gene Family AT3G14350 52.5 6.4e-183 638.6
Sed06g2278 . 67 741 Strubbelig Receptor Gene Family AT3G14350 52.4 1.4e-177 620.9
Sed06g2279 . 1 670 Strubbelig Receptor Gene Family AT3G14350 52.2 1.7e-175 614.0
Sed04g2358 . 11 704 Strubbelig Receptor Gene Family AT3G14350 53.9 1.2e-165 581.3
Sed01g2001 . 1 569 Strubbelig Receptor Gene Family AT4G22130 64.3 8.3e-181 631.3
Sed01g2000 . 21 597 Strubbelig Receptor Gene Family AT4G22130 62.2 5.8e-174 608.6
Sed01g1998 . 339 714 Strubbelig Receptor Gene Family AT4G22130 80.6 1.9e-172 603.6
Sed01g1999 . 245 620 Strubbelig Receptor Gene Family AT4G22130 80.6 1.9e-172 603.6
Sed08g1942 . 341 708 Strubbelig Receptor Gene Family AT4G22130 81.5 9.2e-172 601.3
Sed06g2277 . 401 722 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed06g2278 . 431 752 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed06g2279 . 360 681 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed04g2358 . 393 706 Strubbelig Receptor Gene Family AT4G22130 63.9 6.1e-115 412.5
Sed04g3333 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed04g3334 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed04g3335 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed05g1967 . 476 771 Strubbelig Receptor Gene Family AT4G22130 60.6 9.7e-105 378.6
Sed05g1968 . 476 771 Strubbelig Receptor Gene Family AT4G22130 60.6 9.7e-105 378.6
Sed03g1214 . 376 693 Strubbelig Receptor Gene Family AT4G22130 56.3 7.7e-102 369.0
Sed11g1725 . 324 667 Strubbelig Receptor Gene Family AT4G22130 52.3 3.1e-95 347.1
Sed14g1427 . 453 754 Strubbelig Receptor Gene Family AT4G22130 56.5 5.3e-95 346.3
Sed14g1428 . 453 754 Strubbelig Receptor Gene Family AT4G22130 56.5 5.3e-95 346.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79083 PF07714 PK_Tyr_Ser-Thr 1.90E-42 CL0016 Sed PK