Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3334 ATGGGTTGGAATTGCAATTTGAGGATCTGTGCGCAGGTTTTAGTTGGATTCGTGATCTGCACAGCACAAGTTCTTTTGGGAATTACGAATCCAGGAGATTTTGCTGCTATTAGTAGCTTTCATACCGCACTGGGACTCCCCAGCCTTCCTGGATGGGGCACTGGCCAAGACCCATGTGGAGATGCATGGCAGGGTGTTGAATGCAATGATTCAAACATCATTAAAATAGTTATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGTATGTTTTCTTCAATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAGTTTACCCATTACCATGCAGAACTTATTTCTTTCAGCTAATGAGTTCACTGGAAGCATTCCAAGTTCCATATCATCTTTGACTCAATTGTCAGCCATGTCGTTGAATTATAACAAATTAAGTGGAGAATTACCAGATTCCTTCGAAAGCATTACTCAATTGGTCAATTTCGACTTATCCAATAACAACTTGAGTGGGGTTCTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAGCTATCAGGGACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTAATGGACCCATACCTGAGAAGTTGCTGACTATCCCTACTCTTAGAAAGGATGGAAATCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTTCTGTATCTCAACCACCATCACCACCACCACCACCATTACCATCAAAGCCAGCACAAACACCACCAGTTTCTGAAGCACCACCATCATCTCAACAAAAACCTAAGAAACATGCTGATGGACCTTCCGCACCTGAGGAATCAAGCACTGGAAGAAATAAGAAAAGCACCAAGAGGGTTGTTTTGATAACACTTGCAGCTGTATTGTCGTTCATAATCTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGCTGCAGAAGGAGAACAGTTGATAGTAATTCCAGGCGACATCATCAGATAGGTGCTTATAGAAGTGAGAGACAGAATGCTGGAAATGAGGGATCCATGCATCATCCAATTGATCAGATACCTAAAGTTCCAAAAGAGGCAGTAGTAAAGCCGAAGCAGGAAACTCAAACGGAGACTCAGAAAGTTCCAAAAGCTCATGAAGAGAAAGGGAGAAACATGGCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTTGATGTATATCTAATGCCACCTCCTCCGCCGCCTCCACCGCCCCCTCCACCACCACCTCCTGTTGAAGTGGTCACTGCTGTACCCACCATTCCAGCCGAAGTTCCTCCCTTGAAACCTCCCACCAAACATAAAATTACCTCAACTACTGCAAAATCTTTCACCATTGCGTCCCTTCAGCAATATACAAACAGTTTTTCACAAGAGAACCTTCTAGGAGATGGAACGCTGGGGAGGGTTTATAGGGCACAGCTTCCGAGTGGGAAGCTATGGGCCGTCAAGAAAATGGATAAAAGAGCATTCAGTGAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCATAGGTTACTGTGCTGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTAGTGGAACATTGCAGGATGCACTGCACACAGACAAAGAGTTCAGAAAGAAACTTTCTTGGAATGCCCGAATTAGAATGGCTCTTGGGGCTGCTAGAGCTTTGGAGTATTTGCATGAAGTCTGTCAGCCACCCATTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCGGACTGTGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATACGGTTATGGAGCGCCGGAATTTGAATCAGGAGTTTACACACTTGAGAGTGATGTTTACAGCTTTGGTGTGGTTATGCTGGAACTTCTGACTGGCCGGATGTCTTATGACAGAACAAGGACCCGGGGTGAGCAATTTCTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCGTACTTTGCCGACATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGACGGTTGTTCAGGACTTGTTCAACATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGATTGA 2352 43.66 MGWNCNLRICAQVLVGFVICTAQVLLGITNPGDFAAISSFHTALGLPSLPGWGTGQDPCGDAWQGVECNDSNIIKIVINAANLGGELGDNLGMFSSIQTIDLSNNHIGGSIPSSLPITMQNLFLSANEFTGSIPSSISSLTQLSAMSLNYNKLSGELPDSFESITQLVNFDLSNNNLSGVLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFNGPIPEKLLTIPTLRKDGNPFNSSVSPTSPPSVSQPPSPPPPPLPSKPAQTPPVSEAPPSSQQKPKKHADGPSAPEESSTGRNKKSTKRVVLITLAAVLSFIILVLACVLFMPSCRRRTVDSNSRRHHQIGAYRSERQNAGNEGSMHHPIDQIPKVPKEAVVKPKQETQTETQKVPKAHEEKGRNMARMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPVEVVTAVPTIPAEVPPLKPPTKHKITSTTAKSFTIASLQQYTNSFSQENLLGDGTLGRVYRAQLPSGKLWAVKKMDKRAFSEQKDDEFLELVNNIDRIRHANVVELIGYCAEHGERLLIYEYCSSGTLQDALHTDKEFRKKLSWNARIRMALGAARALEYLHEVCQPPIIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLFNMIRREPHGSGSSED 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43547355 43555962 - Sed0016135.2 Sed04g3334 711937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3334 783 MobiDBLite consensus disorder prediction 253 282 - -
Sed04g3334 783 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515(InterPro)
Sed04g3334 783 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Sed04g3334 783 Pfam Leucine Rich Repeat 120 140 IPR001611 GO:0005515(InterPro)
Sed04g3334 783 PANTHER LEUCINE RICH REPEAT KINASE 2 71 767 IPR051420 -
Sed04g3334 783 ProSiteProfiles Protein kinase domain profile. 493 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3334 783 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 462 570 - -
Sed04g3334 783 MobiDBLite consensus disorder prediction 387 407 - -
Sed04g3334 783 SUPERFAMILY Protein kinase-like (PK-like) 468 768 IPR011009 -
Sed04g3334 783 Gene3D Ribonuclease Inhibitor 33 257 IPR032675 -
Sed04g3334 783 Pfam Protein tyrosine and serine/threonine kinase 496 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3334 783 SUPERFAMILY L domain-like 46 238 - -
Sed04g3334 783 Gene3D Transferase(Phosphotransferase) domain 1 572 775 - -
Sed04g3334 783 MobiDBLite consensus disorder prediction 236 308 - -
Sed04g3334 783 Gene3D Phosphorylase Kinase; domain 1 464 570 - -
Sed04g3334 783 MobiDBLite consensus disorder prediction 345 374 - -
Sed04g3334 783 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
Sed04g3334 783 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 571 780 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3334 Sed-Chr4:43547355 Sed05g1967 Sed-Chr5:32996184 1.60E-291 dispersed
Sed04g3333 Sed-Chr4:43547355 Sed04g3334 Sed-Chr4:43547355 0.00E+00 tandem
Sed04g3334 Sed-Chr4:43547355 Sed04g3335 Sed-Chr4:43547355 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79083 PF07714 PK_Tyr_Ser-Thr 1.90E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3334 - - - 0.0