Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3342 ATGTCTGAGGACACAATCTTTTGCGGCGTGTTCGATGGACATGGGCCTTACGGGCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTTTGAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAATGATTCTGGTAAAAACTGTTTCCAGAGGAATTTGAAGACACCTCCGGATTGTGAGGATTCTGAAAAGGATGGATTTGCTGAGGACTCTCAGAATTCTGTATGGAGAGACGCGTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATTTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATTGGAGACTCTCGAGCAATCCTTGCTTCGAAGGACGCCAACGATTCAACAGTGGCAGTCCAGCTGTCCGTGGATCTTAAGCCAGATTTGCCGAGAGAAGCTGAAAGAATAAAACGGTGTAAAGGTAGGGTCTTCGCATTGCAAGATGAGCCTGAAGTGTCAAGGGTATGGTTACCTTTTGATGATGCTCCCGGTTTAGCAATGGCTCGAGCATTTGGCGATTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCTCATCGAACCCTCACCGACGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCGCGGCCCCAACTCGCTCGTCTGCTGCGAGGTCCGTGGTTGACTCTGCTGCTCGTGAATGGAAACTCAAGTACCCCACTTCAAAAATGGATGATTGTGCTGTCGTCTGCCTATTTTTGGACAGGAGGATGGACTCCGAATCCGACTGTGATGAACCAGGCTACTCATCCGCAACACTGCTTAGCCATCAATCAAGTACTGCAATCGAATCTGATGATGGCCAGAGGTCTGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCGGAAGAAAACAAGACTTTCGGAGGACTACCCATTGACGAGGGAGGCATCGCAAATGTTGTACCCACAGAAGATCAAAACTGGTCGGGTTTGGAAGGAGTCACTCGAGTGAACTCGCTTGTTCAACTTCCTAGATTTTCTGAAGAAAGGCCAGTGTCGTAG 1158 46.72 MSEDTIFCGVFDGHGPYGHLVARKVRDTLPLKLLSFFQSPQLKQNDSGKNCFQRNLKTPPDCEDSEKDGFAEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLSVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSAAPTRSSAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDRRMDSESDCDEPGYSSATLLSHQSSTAIESDDGQRSEPCLQRNNTVRSSEENKTFGGLPIDEGGIANVVPTEDQNWSGLEGVTRVNSLVQLPRFSEERPVS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43582739 43585667 - Sed0027295.1 Sed04g3342 711945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3342 385 ProSiteProfiles PPM-type phosphatase domain profile. 1 283 IPR001932 -
Sed04g3342 385 MobiDBLite consensus disorder prediction 328 350 - -
Sed04g3342 385 Pfam Protein phosphatase 2C 78 260 IPR001932 -
Sed04g3342 385 Gene3D - 1 294 IPR036457 -
Sed04g3342 385 SUPERFAMILY PP2C-like 3 284 IPR036457 -
Sed04g3342 385 CDD PP2Cc 1 283 IPR001932 -
Sed04g3342 385 PANTHER PROTEIN PHOSPHATASE 5 282 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g3342 385 SMART PP2C_4 1 281 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3342 Sed-Chr4:43582739 Sed05g1947 Sed-Chr5:32826486 8.20E-196 dispersed
Sed04g3342 Sed-Chr4:43582739 Sed04g3343 Sed-Chr4:43582739 1.30E-225 tandem
Sed04g3342 Sed-Chr4:43582739 Sed05g3131 Sed-Chr5:41400091 1.40E-150 wgd
Sed04g3342 Sed-Chr4:43582739 Sed05g1946 Sed-Chr5:32826486 8.20E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3342 - - - 0.0