Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3364 ATGGAGGAATCTCTGCTTGGAGGGGAAAGTAGCAGTGGCTCCGATTCTCGACGCCATGTGAGGTTCAACCGCCGCTCCGACGCCATCGCTTATGGCTCTGCGTATCAAAGAGCTGCTGCTCTCGTCGATCTGGCTGAAGATGGCATTGGTATACCCGAGAAAATTCTTGATCAATCAAACTTCCAGAGTGCTGCAAACCTCTACTTCATTTTTATTAAGTTTGATTTGATTTGGTCCTTAAATTTCTTTGCGCTGATAGCCTTAAATTTCTTTGAGAAACCCTTGTGGTGCTTCAAATATGATACGCCTTCTTGTAACGACAGGGAGTATTTTTTTCTTGGGCAGCTGCCTTACTTAACAGCTGTTGAATCTATTATATATGAGGCTGTGACTCTCGTAATACTCATTATACACACTTTTTTCCCAATTTCATATGAAGGTTCCCAGCTTTATTGGAAAAATCCCTTGAACCAGTTGAAGGTCCTTTGCACAATTATTTTGGTGGCTGATTTTCTCGTTTATACCCTATATTTGTCGCCGGTGGCCTTTGATTATCTTCCATTCAGAGTTGCACCATATATTAGAGTTGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCGTCATCCTGGCTGGAATGCTTGGCACATACTTGAATGTCTTGGCTCTATGGCTTTTGTTTCTTCTGTTTTCTAGCTGGTTGGCCTATGTTATGTTTGAGGATACACAACAGGGGAAAATAATATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCTAATAATCCAAATGTTTGGATACCTGCCTACAAGGCATCTCGTTGGTACTGCCTCTTTTTTGTTCTGTACGTGCTGTTGGGAGTTTACTTCGTTACAAATTTGATTCTTGCTGTTGTATACGATAGTTTTAAGGGTCAGCTTGCTAAACAAATTTCTGAGATGGATCGCAAGAGGAAAAGTATACTGGCCAAAGCATTTAGTCTTATGGATACTAATAACGTTGGGTTTATCAATAAGCAGCAGTGCCTTATACTTCTTGAAGAACTTAACAGATACAGGACTTTGCCGAAAATATCAAGGGATGATTATGAGTTAATATTTGATGAGCTAGATGACAGTCGTGATTTTAAGATTAATATGGATGAATTTGCTGATCTTTGCAATGCTATAGCCTTGAAGTTCCAGAAGGAGGACATTCCTTCATGGTTTGAAGGGTATCCTTTTGTCTACGATTCAATTTTATCAAACAAGTTGAAAGTATTTGTGCGGAGCCCCACATTTGGATATGCTATATCCTTTATCCTCATTCTGAACCTGGTTGCTGTTATTATTGAAACAACACTTGATATAGAAAACAACGTTGGTCAGAAAGCATGGCAAGAACTCGAGTTTGTATTTGGTTGGATATATGTAGTTGAAATGGGCCTAAAAATCTACGCATATGGGTTTATGAATTATTGGAGAGACGGCCAAAATCAGTTTGATTTCCTTGTCACATGGATAATAGTGATTGGAGAAACTTTAACTTTCGTGGCACCTAGTGGACTAACTTTTCTTTCCAATGGAGAATGGATTCGCTACCTTTTGATAGCAAGAATGTTACGCTTGATAAGGCTCCTAATGAATGTCAAGCAATATCGAGCATTTCTTGCTACCTTTTTAACTCTCATTCCTAGTTTGATGCCATATCTTGGAACGATTTTCTGTGTTCTCTGTCTTTATTGCACTCTTGGTGTGCAGATCTTTGGAGGACTTGTCAATGCTGGAAATCCCACTTTGCCAAAGACCGATCTGGATGACGATGACTACCTACTTTTCAATTTCAACGACTATCCTAATGGCATGGTGACACTGTTCAATTTGCTCGTTATGGGAAACTGGCAAGACTGGATGCAGAGCTACAAGGAATTAACGGGAAGTATTTGGACCCTTGTTTATTTTATCAGTTTCTACCTAATAACCGTTTTGCTGCTCTTGAATTTGGTTGTAGCTTTTGTCTTGGAGGCATTCTTTGCTGAATTGGATATGGAGTCTTCAGAAAATGGTGAAGAACAGGATCAGGAGGGAAATAGTAGAAAAGATCGTCGACGTTTAATTGGCACAAAATCTCGGAGCAGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAATTGGACCAAAAGGATTCCGATTAA 2208 39.36 MEESLLGGESSSGSDSRRHVRFNRRSDAIAYGSAYQRAAALVDLAEDGIGIPEKILDQSNFQSAANLYFIFIKFDLIWSLNFFALIALNFFEKPLWCFKYDTPSCNDREYFFLGQLPYLTAVESIIYEAVTLVILIIHTFFPISYEGSQLYWKNPLNQLKVLCTIILVADFLVYTLYLSPVAFDYLPFRVAPYIRVVFFIMNIRHLRESIVILAGMLGTYLNVLALWLLFLLFSSWLAYVMFEDTQQGKIIFTSFGATLYQMFILFTTSNNPNVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKGQLAKQISEMDRKRKSILAKAFSLMDTNNVGFINKQQCLILLEELNRYRTLPKISRDDYELIFDELDDSRDFKINMDEFADLCNAIALKFQKEDIPSWFEGYPFVYDSILSNKLKVFVRSPTFGYAISFILILNLVAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMGLKIYAYGFMNYWRDGQNQFDFLVTWIIVIGETLTFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMNVKQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQIFGGLVNAGNPTLPKTDLDDDDYLLFNFNDYPNGMVTLFNLLVMGNWQDWMQSYKELTGSIWTLVYFISFYLITVLLLLNLVVAFVLEAFFAELDMESSENGEEQDQEGNSRKDRRRLIGTKSRSSKVDILLHHMLSAELDQKDSD 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43689354 43704612 + Sed0011332.2 Sed04g3364 711967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3364 735 ProSiteProfiles EF-hand calcium-binding domain profile. 326 361 IPR002048 GO:0005509(InterPro)
Sed04g3364 735 Gene3D - 559 718 - -
Sed04g3364 735 CDD EFh 331 395 IPR002048 GO:0005509(InterPro)
Sed04g3364 735 Gene3D - 313 396 - -
Sed04g3364 735 SUPERFAMILY Voltage-gated potassium channels 433 679 - -
Sed04g3364 735 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 734 IPR044581 GO:0000325(PANTHER)|GO:0005245(PANTHER)|GO:0005245(InterPro)|GO:0005774(PANTHER)|GO:0006816(PANTHER)
Sed04g3364 735 MobiDBLite consensus disorder prediction 694 710 - -
Sed04g3364 735 Gene3D - 205 312 - -
Sed04g3364 735 FunFam Two pore calcium channel protein 1 205 316 - -
Sed04g3364 735 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509(InterPro)
Sed04g3364 735 FunFam Two pore calcium channel protein 1 426 558 - -
Sed04g3364 735 Pfam Ion transport protein 434 679 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3364 735 Pfam Ion transport protein 127 315 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3364 735 MobiDBLite consensus disorder prediction 689 710 - -
Sed04g3364 735 SUPERFAMILY EF-hand 321 414 IPR011992 -
Sed04g3364 735 FunFam Two pore calcium channel protein 1 559 716 - -
Sed04g3364 735 Gene3D - 425 558 IPR027359 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3363 Sed-Chr4:43689354 Sed04g3364 Sed-Chr4:43689354 0.00E+00 tandem
Sed04g3364 Sed-Chr4:43689354 Sed04g3365 Sed-Chr4:43689354 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3364 K16900 - csv:101206980 1265.37