Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3365 ATGGCTGAAGATGGCATTGGTATACCCGAGAAAATTCTTGATCAATCAAACTTCCAGAGTGCTGCAAACCTCTACTTCATTTTTATTAAGTTTGATTTGATTTGGTCCTTAAATTTCTTTGCGCTGATAGCCTTAAATTTCTTTGAGAAACCCTTGTGGTGCTTCAAATATGATACGCCTTCTTGTAACGACAGGGAGTATTTTTTTCTTGGGCAGCTGCCTTACTTAACAGCTGTTGAATCTATTATATATGAGGCTGTGACTCTCGTAATACTCATTATACACACTTTTTTCCCAATTTCATATGAAGGTTCCCAGCTTTATTGGAAAAATCCCTTGAACCAGTTGAAGGTCCTTTGCACAATTATTTTGGTGGCTGATTTTCTCGTTTATACCCTATATTTGTCGCCGGTGGCCTTTGATTATCTTCCATTCAGAGTTGCACCATATATTAGAGTTGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCGTCATCCTGGCTGGAATGCTTGGCACATACTTGAATGTCTTGGCTCTATGGCTTTTGTTTCTTCTGTTTTCTAGCTGGTTGGCCTATGTTATGTTTGAGGATACACAACAGGGGAAAATAATATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCTAATAATCCAAATGTTTGGATACCTGCCTACAAGGCATCTCGTTGGTACTGCCTCTTTTTTGTTCTGTACGTGCTGTTGGGAGTTTACTTCGTTACAAATTTGATTCTTGCTGTTGTATACGATAGTTTTAAGGGTCAGCTTGCTAAACAAATTTCTGAGATGGATCGCAAGAGGAAAAGTATACTGGCCAAAGCATTTAGTCTTATGGATACTAATAACGTTGGGTTTATCAATAAGCAGCAGTGCCTTATACTTCTTGAAGAACTTAACAGATACAGGACTTTGCCGAAAATATCAAGGGATGATTATGAGTTAATATTTGATGAGCTAGATGACAGTCGTGATTTTAAGATTAATATGGATGAATTTGCTGATCTTTGCAATGCTATAGCCTTGAAGTTCCAGAAGGAGGACATTCCTTCATGGTTTGAAGGGTATCCTTTTGTCTACGATTCAATTTTATCAAACAAGTTGAAAGTATTTGTGCGGAGCCCCACATTTGGATATGCTATATCCTTTATCCTCATTCTGAACCTGGTTGCTGTTATTATTGAAACAACACTTGATATAGAAAACAACGTTGGTCAGAAAGCATGGCAAGAACTCGAGTTTGTATTTGGTTGGATATATGTAGTTGAAATGGGCCTAAAAATCTACGCATATGGGTTTATGAATTATTGGAGAGACGGCCAAAATCAGTTTGATTTCCTTGTCACATGGATAATAGTGATTGGAGAAACTTTAACTTTCGTGGCACCTAGTGGACTAACTTTTCTTTCCAATGGAGAATGGATTCGCTACCTTTTGATAGCAAGAATGTTACGCTTGATAAGGCTCCTAATGAATGTCAAGCAATATCGAGCATTTCTTGCTACCTTTTTAACTCTCATTCCTAGTTTGATGCCATATCTTGGAACGATTTTCTGTGTTCTCTGTCTTTATTGCACTCTTGGTGTGCAGATCTTTGGAGGACTTGTCAATGCTGGAAATCCCACTTTGCCAAAGACCGATCTGGATGACGATGACTACCTACTTTTCAATTTCAACGACTATCCTAATGGCATGGTGACACTGTTCAATTTGCTCGTTATGGGAAACTGGCAAGACTGGATGCAGAGCTACAAGGAATTAACGGGAAGTATTTGGACCCTTGTTTATTTTATCAGTTTCTACCTAATAACCGTTTTGCTGCTCTTGAATTTGGTTGTAGCTTTTGTCTTGGAGGCATTCTTTGCTGAATTGGATATGGAGTCTTCAGAAAATGGTGAAGAACAGGATCAGGAGGGAAATAGTAGAAAAGATCGTCGACGTTTAATTGGCACAAAATCTCGGAGCAGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAATTGGACCAAAAGGATTCCGATTAA 2079 38.24 MAEDGIGIPEKILDQSNFQSAANLYFIFIKFDLIWSLNFFALIALNFFEKPLWCFKYDTPSCNDREYFFLGQLPYLTAVESIIYEAVTLVILIIHTFFPISYEGSQLYWKNPLNQLKVLCTIILVADFLVYTLYLSPVAFDYLPFRVAPYIRVVFFIMNIRHLRESIVILAGMLGTYLNVLALWLLFLLFSSWLAYVMFEDTQQGKIIFTSFGATLYQMFILFTTSNNPNVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKGQLAKQISEMDRKRKSILAKAFSLMDTNNVGFINKQQCLILLEELNRYRTLPKISRDDYELIFDELDDSRDFKINMDEFADLCNAIALKFQKEDIPSWFEGYPFVYDSILSNKLKVFVRSPTFGYAISFILILNLVAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMGLKIYAYGFMNYWRDGQNQFDFLVTWIIVIGETLTFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMNVKQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQIFGGLVNAGNPTLPKTDLDDDDYLLFNFNDYPNGMVTLFNLLVMGNWQDWMQSYKELTGSIWTLVYFISFYLITVLLLLNLVVAFVLEAFFAELDMESSENGEEQDQEGNSRKDRRRLIGTKSRSSKVDILLHHMLSAELDQKDSD 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43689354 43704612 + Sed0011332.3 Sed04g3365 711968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3365 692 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509(InterPro)
Sed04g3365 692 MobiDBLite consensus disorder prediction 646 667 - -
Sed04g3365 692 CDD EFh 288 352 IPR002048 GO:0005509(InterPro)
Sed04g3365 692 Pfam Ion transport protein 391 636 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3365 692 Pfam Ion transport protein 85 272 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g3365 692 MobiDBLite consensus disorder prediction 651 667 - -
Sed04g3365 692 Gene3D - 516 675 - -
Sed04g3365 692 SUPERFAMILY EF-hand 278 371 IPR011992 -
Sed04g3365 692 Gene3D - 270 353 - -
Sed04g3365 692 ProSiteProfiles EF-hand calcium-binding domain profile. 283 318 IPR002048 GO:0005509(InterPro)
Sed04g3365 692 FunFam Two pore calcium channel protein 1 516 673 - -
Sed04g3365 692 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 691 IPR044581 GO:0000325(PANTHER)|GO:0005245(PANTHER)|GO:0005245(InterPro)|GO:0005774(PANTHER)|GO:0006816(PANTHER)
Sed04g3365 692 FunFam Two pore calcium channel protein 1 162 273 - -
Sed04g3365 692 SUPERFAMILY Voltage-gated potassium channels 390 636 - -
Sed04g3365 692 Gene3D - 382 515 IPR027359 -
Sed04g3365 692 FunFam Two pore calcium channel protein 1 383 515 - -
Sed04g3365 692 Gene3D - 162 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3363 Sed-Chr4:43689354 Sed04g3365 Sed-Chr4:43689354 0.00E+00 dispersed
Sed04g3364 Sed-Chr4:43689354 Sed04g3365 Sed-Chr4:43689354 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3365 K16900 - csv:101206980 1214.91