Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3367 ATGTCTTCTTCTTCTTTTTCACAAACTCTCTTCTCCACCGTAGTTTCAGTTCTAATATCCATTTCCATCACAGTCTCAGCCACAGAGTTCGTCTTCAACACCAACTTCACTTCCACCAGCACTTTGCTCTTCGGCAACGCCACCCTTGATTCTTCAATTCTCGTTCTCACCAGAAATTCCCCTTTCACCATCGGCCGTGCCCTTTACCCCTTCAAGATCCCGATTCGTTTCTCCAATTCCTCCTTTTCGTTTGCAACTTCATTCATCTTTACCGTTTCTCCTCAGCCAAATCTCCTCCCCGGCCATGGATTCGCGTTTCTCTTCACACCCTTTACTGGAATCAACGGCGCGAGCTCGGCTCAGAACTTGGGGCTGTTCAATTTCACCAATAATGGAAACCCTACTAACCATGTCTTCGCCGTCGAGTTCGATTCGTTTCGAAATCAGGAGTTTAATGATACGGATGATAACCATGTGGGTGTGGATTTGAATTCTCTTGTTTCTAATGTTTCTTCATCTGCAGGGTTTTGGGGTGGACCAGATGATGGGGAATTTAAGAAGTTGAAGATTAACAATGGAGAAACTTATCAGGTTTGGATTGAATGTTTGAATTCTTTGGTTAATATTACTATGGCTGAAGTGGGTGTGAAGAAGCCTAGAAGGGCATTGATATCTGTGTTTGTGGATTTTTCTGAATTGCTTTTGGATGAGATGTATGTAGGATTTACTGCAGCCACAGGGCAATTAGTTCAAAGCCATAAGATATTGTCTTGGAGTTTTAGTACTTCTAACTTGTCAATTGCTGATGCTTTAGTTGTTACTAATTTGCCATCTTTTGCTCCTCATCATAATGACTCCATTTTTAACTCAATAGCTTTTCTTGTGGGGATAATTGTGGGTAGTGCTGGACTTGTGATTATCTGTTGTGTTGTTGTCTATTTTGTTGTATTTGTCAAAAGGAGGGGAAGAAAGAAACCAAAGGATGATGAAATTGAAGATTGGGAGTTGGAGTATTGGCCTCATAGGTTTGCTTATGAGGATGTTTTTGAAGCAACTGATGGCTTCTCAGAGGCCAATGTGATTGGCTTGGGTCGCAATGGGAAGGTCTATAAAGGGAAGTTGGGGAGATTGAATGTTGCTGTGAAGAGAATCTCAGTTGAAGCTGTCTGTGGGATGCGGGAGTTCGTGGCTGAGATTTCGAGCATCGGTAGATTGAAGCATAGGAATTTAGTAAAGCTTATAGGGTGGTGTAAGAAAGAGAAAGGAAGCTTAATCTTAATGTATGATTACATGGAAAATGGAAGTTTAGACAAGAAGTTGTTTGAGTGTGATGAGAGTTCAATGCTTAGTTGGGAGAAAAGGATGAATGTCTTGAGAGATGTAGCCATAGGGTTGCTGTATTTGCACCAAGGTTGGGATTACAAGGTTCTACATAGAGACATAAAAGCAAGCAACGTGCTTCTCGGCAAGGACATGAATGCAAGATTGGGAGATTTTGGGTTGGCTCGAATGCAACCCCATGAGCGAATGGTGGACACAACTGGAGTTGTGGGAACCGTCGGTTATATGGCGCCAGAGGTCATTCGAACAGGGCTTGTATCGGCACAAGCCGACGTTTTTGGGTTTGGTGTGTTGGTTTTGGAGGTGGTTTGTGGGAGGAGAGCTATAGAAGAAGGGAAACCATGGTTGATAGATTGGGTAAGAGGGGTAATGGAGAAGAATGAGCTTACACTTGCCATTGATAAGAGATTGAAAGTTGAAGATCTTGATGAAATGGAGAGAATGATTTGTTTGGGATTGTTATGTGCACATCCTGAGGCTGGTGCAAGGCCAACAATGCAACAAGTTGTTAACATTTTGGGTAAGAGAAATTTAAGTAATTCAAATGATGGATTGTTAAATAGATTAAGATCAAGAAGAATATTGTCTGAGATTTACCAAATCAACAATTGTCAGCAAGATCATCCAACGTTTGAAGAAATGAAAACATCTTCTTCTTCAACATCACTCATTGAATCAGACAATTTGCAGAGTGGTCGCTAG 2043 41.65 MSSSSFSQTLFSTVVSVLISISITVSATEFVFNTNFTSTSTLLFGNATLDSSILVLTRNSPFTIGRALYPFKIPIRFSNSSFSFATSFIFTVSPQPNLLPGHGFAFLFTPFTGINGASSAQNLGLFNFTNNGNPTNHVFAVEFDSFRNQEFNDTDDNHVGVDLNSLVSNVSSSAGFWGGPDDGEFKKLKINNGETYQVWIECLNSLVNITMAEVGVKKPRRALISVFVDFSELLLDEMYVGFTAATGQLVQSHKILSWSFSTSNLSIADALVVTNLPSFAPHHNDSIFNSIAFLVGIIVGSAGLVIICCVVVYFVVFVKRRGRKKPKDDEIEDWELEYWPHRFAYEDVFEATDGFSEANVIGLGRNGKVYKGKLGRLNVAVKRISVEAVCGMREFVAEISSIGRLKHRNLVKLIGWCKKEKGSLILMYDYMENGSLDKKLFECDESSMLSWEKRMNVLRDVAIGLLYLHQGWDYKVLHRDIKASNVLLGKDMNARLGDFGLARMQPHERMVDTTGVVGTVGYMAPEVIRTGLVSAQADVFGFGVLVLEVVCGRRAIEEGKPWLIDWVRGVMEKNELTLAIDKRLKVEDLDEMERMICLGLLCAHPEAGARPTMQQVVNILGKRNLSNSNDGLLNRLRSRRILSEIYQINNCQQDHPTFEEMKTSSSSTSLIESDNLQSGR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43710659 43713157 + Sed0024293.1 Sed04g3367 711970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3367 680 Pfam Legume lectin domain 28 265 IPR001220 GO:0030246(InterPro)
Sed04g3367 680 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 315 430 - -
Sed04g3367 680 Pfam Protein tyrosine and serine/threonine kinase 359 620 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3367 680 PANTHER - 30 626 IPR050528 GO:0005886(PANTHER)
Sed04g3367 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 266 IPR013320 -
Sed04g3367 680 FunFam L-type lectin-domain containing receptor kinase S.4 431 631 - -
Sed04g3367 680 CDD lectin_legume_LecRK_Arcelin_ConA 28 263 IPR001220 GO:0030246(InterPro)
Sed04g3367 680 Gene3D Phosphorylase Kinase; domain 1 326 430 - -
Sed04g3367 680 Gene3D Transferase(Phosphotransferase) domain 1 431 637 - -
Sed04g3367 680 SUPERFAMILY Protein kinase-like (PK-like) 331 620 IPR011009 -
Sed04g3367 680 ProSiteProfiles Protein kinase domain profile. 355 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3367 680 SMART serkin_6 355 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3367 680 FunFam L-type lectin-domain containing receptor kinase V.9 26 270 - -
Sed04g3367 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3367 680 MobiDBLite consensus disorder prediction 658 680 - -
Sed04g3367 680 ProSitePatterns Protein kinases ATP-binding region signature. 361 382 IPR017441 GO:0005524(InterPro)
Sed04g3367 680 Gene3D - 26 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3367 Sed-Chr4:43710659 Sed08g0078 Sed-Chr8:423906 6.00E-125 dispersed
Sed04g3367 Sed-Chr4:43710659 Sed05g1961 Sed-Chr5:32926730 7.40E-301 wgd
Sed04g3367 Sed-Chr4:43710659 Sed08g2265 Sed-Chr8:36246975 1.00E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79085 PF00069 Pkinase 1.70E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3367 - - - 0.0