Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3374 ATGAGTAGTGTTTGTGCTGAGAATCAGAAATTTCAGTTTCAATTTCCGATTCCTTGTTGTAATTTTGTTTCCGAGAAGAATCGAAACGGCGAAATGTGTTCTGATTCACCGCGTTTTTTGTTTGAATCGCTTTTGCAGAAGTTCTTGCCGTTCAACGGCGAGGATGCGGCGGAGGACGACGGCGATCCGTACTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGCACTCGTAGTCGGAGCCACGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGGCGAGATCCGCGCCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGACGCGGCGGTTGCGGCAGCGGTGATGTTTGCGAGTTCGCTCATGGAGTTTTTGAGTATTGGCTTCATCCGGCGAGGTACGGGACTGAAGCTTGTAAAGATGGAAAGAATTGTAAGAGGAAGGTGTGTTTCTTCGCTCATTCGCCTCGAGAGCTCCGCCTCTTGCCGCCGGCGAGTAATTTCCATGGCGGCGGCGGCGGTGGATTTTGTTCGTCGCCGAATCTGAAGAGTTCATCTAATCACAGATCAGGTACCGGTACTTCGAATCATTGCTGTATGTTTTGTCATTGCGGCGGGGCGGCCGCAACTTCCTCGCCGACGTCGACGCTTATAGGAATGTCTCACCTCTCGCCGCCGTACTCGCCGCCTCTCTCGCCTGGAAAACCTCGTTCGCTGAACGGATTTTGGCCGATTTCGAGGTATAATCCTGATCAGTCTAAATTAAATGGAGTTTTAAGCTATAAAGATGCACTGACCGAGCTTATGAGCTCTATCGAATCCATGAATATCGACGACGCTACCGCCTCCGCCCTCTCCGCCGCCATCTCCGCCCCTAGACCAACGCCTTGGATTGACGTTTCTTCCCTCAACGCGGAAGATCAACTGCAGTTTATTCTCTCGCCTTCCGCCCCAAATATCTCCGCCGCATCGGTGAAATTTTCCGGCGAGAATAAAGCTAACGCCGACAATGGATTGGCCTCCGCCTCCAGTCCCGATCTCGGATGGGTTAATGATCTGCTAATGTAA 1098 52.19 MSSVCAENQKFQFQFPIPCCNFVSEKNRNGEMCSDSPRFLFESLLQKFLPFNGEDAAEDDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGSGDVCEFAHGVFEYWLHPARYGTEACKDGKNCKRKVCFFAHSPRELRLLPPASNFHGGGGGGFCSSPNLKSSSNHRSGTGTSNHCCMFCHCGGAAATSSPTSTLIGMSHLSPPYSPPLSPGKPRSLNGFWPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDATASALSAAISAPRPTPWIDVSSLNAEDQLQFILSPSAPNISAASVKFSGENKANADNGLASASSPDLGWVNDLLM 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43754042 43755571 + Sed0013056.1 Sed04g3374 711977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3374 365 FunFam Zinc finger CCCH domain-containing protein 66 66 134 - -
Sed04g3374 365 PANTHER UNKEMPT FAMILY MEMBER 43 328 IPR045234 -
Sed04g3374 365 Gene3D - 108 171 - -
Sed04g3374 365 ProSiteProfiles Zinc finger C3H1-type profile. 109 135 IPR000571 GO:0046872(InterPro)
Sed04g3374 365 SMART c3hfinal6 108 134 IPR000571 GO:0046872(InterPro)
Sed04g3374 365 SMART c3hfinal6 143 166 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3374 Sed-Chr4:43754042 Sed12g1796 Sed-Chr12:29019216 6.40E-57 dispersed
Sed04g3374 Sed-Chr4:43754042 Sed05g1938 Sed-Chr5:32757663 1.50E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38338 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3374 K23047 - csv:101211149 530.406