Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3375 ATGATGAAGCGTCATGTTTACATCAATGACGACGAACCATCGAATGATCTTTATTGCGATAACCGCATTTCAAATCGGAAATACACATTATTGAACTTTCTCCCTAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGCTAATTGCATGCCTACAATTATGGCCTCTTATAACTCCAGTTAATCCAGCCAGTACATGGGGTCCACTTATCTTCATTTTTTCTGTGTCTGCAACAAAAGAGGCATGGGATGATTACAATAGACATTTATCAGACAAAAAAGCAAATGAAAAAGAAGTTTGGGTTGTGAGGCAGGGTACTAGAGAAATTATTAAAGCACAAGATATTCATGTGGGTAATTTAGTATGGCTCAGAGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATCGGTACCTCCGATCCTCAAGGAATTTGCCATATAGAGACATCTGCCCTTGATGGAGAAACCGACTTAAAGACAAGGGTCATACCCTCAGCTTGCATGGGATTAGATTTTGATCTATTAAACAAGATTAAGGGAGTTATAGAGTGCCCTATACCAGATAAGGACATTACAAGATTTGATGCAAACATTCGGTTATTTCCTCCCTTCATTGACAATGATGTGTGCCCTTTGACTGTAAAAAACACGATTCTTCAGTCATGTTACTTGCGGAACACAGAGTGGGCGTGTGGAGTAGCCGTCTACACTGGCAATGAAACCAAGCTGGGAATGAGCAGGGGTGTCCCAGAACCAAAACTAACAGCTATAGATGCAATGATTGACAAGTTAACTGGTGCTATATTTGTTTTCCAAATTGTGGTGGTTGTTGTTCTTGGTATAGCTGGTAATATGTGGAAGGACTCTGAAGGCAGAAAGCTATGGTATGTGCAACATCCAGAGGAAGGTCCATGGTATGAGCTACTTGTCATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATTATGATACCCATTTCAATTAAGGTGTCTTTGGATCTTTTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGATTGACCACGAGAATGGTATTCCTTCCCATGCTACAAATACAGCAATAAGTGAGGACCTGGGACAAGTTGAATACATTATGACGGATAAAACTGGCACGCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAATGGCATATTTTATGGAAATGAAACTGGAGATGCCTTGAAAGATGAAAAGTTGCTCAATGCTATTTCAAGCAGCTCTTCGGATGTTATAAGATTTCTCACAATTATGGCAATTTGTAATACAGTGGTGCCTACGAAAAGCAAAAGTGGAAATATCATGTACAAGGCACAGTCACAGGATGAGGATGCTCTCGTGAATGCCGCTGCTTATTTGCATATGGTATTTGTCAATAAGAATGCTAATATTCTTGAAATTCAGTTTAATGGAATGCTAAATAGGTATGAGCTTCTAGATACTCTGGAGTTCACATCTGAACGAAAAAGAATGTCTGTGGTCGTTAAAGATTGTCAGAATGAGAAGATTATCCTCCTGTCAAAAGGAGCTGATGAAGCCATACTTCCTCATGCTTATGCTGGCCAGCAAACAAGAACATTTATTGAAGCTGTGGATCAATATGCACAACTAGGGCTCCGCACATTATGCCTGGCATGGTGTGAACTAGACGAAGATGAGTATCAAGAATGGGCTCTTATGTTTAAGGAGGCTAATAGCACATTGGTTGACAGGGAGTGGAGGTTAGCTGAAGTTTGCCAAAGATTAGAGCGCAATTTTGAAGTCATTGGAGTTGCTGCTATAGAAGATAGGCTTCAGGATGGAGTCCCTGAAACAATTGAAACATTAAGAAGAGCAGGAATAAATTTCTGGATGCTGACCGGAGACAAGCAGAACACTGCCATTCAGATAGCTCTTCTATGCAACTTTATTTCACCAGAGCCCAAAGGACAGTTATTGTTAATTAATGGAAAAACGGAGGATGAAGTTTGTAGAAGCTTGGAGAGAGTTGTTCTAACTATGAAGACCACAACCTCAGAACCCAAGGATGTTGCTTTCGTTGTTGATGGCTGGGCTCTTGAAATAGCTCTCAAGAATTATCGCAGGGCTTTCACTGAATTAGCAATACTATCCAGAACTGCTATATGCTGTCGCGTGACTCCATCACAGAAGGCTCAGTTAGTGGAACTCTTAAAATCGTGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAACAGGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAAGCAGCTAGGGCAGCTGATTATAGTATTGGAAAATTCAGGTTTCTGAAAAGATTGATTCTAGTTCATGGACGATACTCATACAACCGTACTGCATTTTTGTCACAATATTCATTCTATAAATCCTTATTGTTATGTTTTATCCAGATCTCTTTCTCTTTCATTTCAGGCGTCTCTGGGACCAGTCTATTTAATTCTGTTAGCTTGATGGCTTACAATGTTTTCTACACTAGTATTCCTGTATTAGTTAGCGTCCTCGACAAAGATCTCAGCGAAGAAACAGTGATGCAACATCCTCAGATTTTATTTTACTGCCAAGCTGGGAGGCTTTTAAATCCCAGCACATTTGCTGGATGGTTCGGACGATCTCTATTTCATGCTGTTGTGGTGTTTGTAATTAGCATCCATGCTTATGCTAACGAAAAAAGTGAGATGGTTGAGATTTCAATGGTGGCTCTATCCGGATGCATCTGGTTACAGGCTTTTGTAGTGACTTTGGAGACCAATTCATTTACAATATTGCAACATATTGCAATATGGGGGAATTTAGCTTCTTTCTATGTGATCAATTGGATCTTCAGTGCCATTCCTTCATCCGAGATGTATACGATAATGTTCCAGCTATGCGGACAACCATCTTATTGGATAACCATATTTTTAATAGTGGGCGTGGGAATGGGGCCACTCCTAGCAATAAAATACTTGAGATACACATACAGAGCAAGCAAAATCAACCTTCTTCAACAGGCGGAGCGATTGGGTGGGCCGATCATGTGGCTGAAAAACATAGAACAACACCAGCCTCCTCGGACCGTTGAGAAAAAAGAGGTTTCTACGCTCTCAATAACTCAGCTCAAAAACAGAAACTCAGTTTATGAACCTCTTTTATCAGATTCTCCAACTCCCACCAGAAGATCTCAGTCTTCAGGAACCTCCTTTGATTTCTTTCACTCACCCTCTACTTATTCTAGAAATAAAGATAACTGA 3315 40.12 MMKRHVYINDDEPSNDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFSVSATKEAWDDYNRHLSDKKANEKEVWVVRQGTREIIKAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICHIETSALDGETDLKTRVIPSACMGLDFDLLNKIKGVIECPIPDKDITRFDANIRLFPPFIDNDVCPLTVKNTILQSCYLRNTEWACGVAVYTGNETKLGMSRGVPEPKLTAIDAMIDKLTGAIFVFQIVVVVVLGIAGNMWKDSEGRKLWYVQHPEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLLKSLYAKFIDWDYDMIDHENGIPSHATNTAISEDLGQVEYIMTDKTGTLTENKMIFRRCCINGIFYGNETGDALKDEKLLNAISSSSSDVIRFLTIMAICNTVVPTKSKSGNIMYKAQSQDEDALVNAAAYLHMVFVNKNANILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNEKIILLSKGADEAILPHAYAGQQTRTFIEAVDQYAQLGLRTLCLAWCELDEDEYQEWALMFKEANSTLVDREWRLAEVCQRLERNFEVIGVAAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLINGKTEDEVCRSLERVVLTMKTTTSEPKDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLLCFIQISFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEISMVALSGCIWLQAFVVTLETNSFTILQHIAIWGNLASFYVINWIFSAIPSSEMYTIMFQLCGQPSYWITIFLIVGVGMGPLLAIKYLRYTYRASKINLLQQAERLGGPIMWLKNIEQHQPPRTVEKKEVSTLSITQLKNRNSVYEPLLSDSPTPTRRSQSSGTSFDFFHSPSTYSRNKDN 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43756772 43774662 - Sed0000387.1 Sed04g3375 711978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3375 1104 Gene3D - 445 590 IPR023299 GO:0000166(InterPro)
Sed04g3375 1104 FunFam Phospholipid-transporting ATPase 450 593 - -
Sed04g3375 1104 NCBIfam HAD-IC family P-type ATPase 718 835 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g3375 1104 NCBIfam phospholipid-translocating P-type ATPase 18 1024 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed04g3375 1104 SUPERFAMILY Calcium ATPase, transduction domain A 101 249 IPR008250 -
Sed04g3375 1104 MobiDBLite consensus disorder prediction 1069 1104 - -
Sed04g3375 1104 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 1016 IPR023298 -
Sed04g3375 1104 Pfam E1-E2 ATPase 100 294 - -
Sed04g3375 1104 FunFam Phospholipid-transporting ATPase 76 252 - -
Sed04g3375 1104 SUPERFAMILY HAD-like 369 795 IPR036412 -
Sed04g3375 1104 Gene3D - 75 252 - -
Sed04g3375 1104 SFLD p-type atpase 363 802 IPR044492 -
Sed04g3375 1104 Pfam Phospholipid-translocating ATPase N-terminal 6 71 IPR032631 -
Sed04g3375 1104 PRINTS P-type cation-transporting ATPase superfamily signature 751 770 - -
Sed04g3375 1104 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Sed04g3375 1104 PRINTS P-type cation-transporting ATPase superfamily signature 153 167 - -
Sed04g3375 1104 PRINTS P-type cation-transporting ATPase superfamily signature 629 639 - -
Sed04g3375 1104 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 574 IPR023299 GO:0000166(InterPro)
Sed04g3375 1104 SFLD Haloacid Dehalogenase 363 802 - -
Sed04g3375 1104 MobiDBLite consensus disorder prediction 1069 1098 - -
Sed04g3375 1104 Pfam Phospholipid-translocating P-type ATPase C-terminal 779 1016 IPR032630 -
Sed04g3375 1104 FunFam Phospholipid-transporting ATPase 603 790 - -
Sed04g3375 1104 Pfam haloacid dehalogenase-like hydrolase 598 765 - -
Sed04g3375 1104 Pfam Cation transport ATPase (P-type) 436 534 - -
Sed04g3375 1104 Gene3D - 603 791 IPR023214 -
Sed04g3375 1104 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Sed04g3375 1104 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 1013 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3375 Sed-Chr4:43756772 Sed14g0573 Sed-Chr14:5720843 2.70E-159 dispersed
Sed04g3375 Sed-Chr4:43756772 Sed05g1937 Sed-Chr5:32731390 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3375 K01530 - csv:101210900 2054.64