Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3380 ATGACGCAGCTAGTGAGAATTTCTGGAAGGGCTCCCTTCGGGGTAAAGCCCTACAATTATGAGTTCAAATATTTTAGGGCCCAGTTTTCGGGCCATAATTCCATAACGAGCATATATTTGCAGGGTTATATTAAACATACATGTTTTAAAAAAAATAAAAAAATAAATAATAATAAATGGTTATTAAACGGGGTATATGCAAACAAATATGAATTTGGTTCGTTGTTGTTGTTATTGCTGCTCGGATTTATGGGGTACGTGTCGAAATTCATTGGTTTGGATTTGTTTCTTCCCTTCATCTGGCTGATAAAGGGGAGAAATATGATTTCGAGATCGTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGATGTGAAAACGAAGCGGTTTCCTCGAGTCATGACGGTTCCGGGTAATGTAGATGAGCTCGATGATGATCAGGCCTGCAGTGTGACATCTGAAAATCCGTCATCAATTTCCTCGGATCGGATGATAATCGTAGCAAACCAGCTTCCAGTAAGAGCAATTCGAATGGAGGATGATAAGTCTTGGAGTTTCAGTTGGAACGAAGACTCTTTGCTTTTGCAGCTTAAAGATGGTTTACCAGAAGATATGAAGGTTCTTTATGTTGGTTCGTTGAAAGCCGATATCCAACCCGATGAGCAAGATGAGGTATCCCAGGTTTTGTTGGAGAAATTTAGGTGTATTCCTACGTTTTTGCCTCCTCATATATTGGAAAAGTTTTATGATGGTTTCTGCAAGAGTCATTTGTGGCCTCTCTTTCATTATAGGCTTCCATATTCTGCTGATCAGAATGGGCGATTCGATCGCTCCATGTGGGAAGCCTATGTATCTGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCTACTTTCTTGAGAAGGCGCTTTAACAGAGTTAAAATGGGATTTTTTCTTCATAGTCCATTTCCGTCATCTGAAATCTACCGTACCCTTCCGGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGGTTTCACACTTTCGATTATGCTCGTCATTTTCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCTAAGAGAGGGTATCTTGGATTGGAATACTTTGGCAGGACGATTGGCATAAAGATAATGCCTGTTGGTATTCATATGCGTCGGATTGAATCGGTGATGAAACTGGCAGACGAGGATGCTAAGACTAAGGAACTCAAGCAGCAATTTGCAGGGAAGTCGGTCTTGCTTGGCGTTGATGATATGGACATTTTCAAAGGTATCAACCTGAAACTGTTAGCTATGGAACAGGTACTTCAGCAACATCCTAAGTGGCAGGGAAAGGCTGTACTGATCCAAATTATAAATCCTGCCAGAAGTAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAACCGCCAGAAGGATCAACCAGGAATATGGGCATCCTGGCTATGATCCAATAGTACTTCTCAATAGACATGTGCCAATTACTGAAAGGGTTGTTTATTATAGCATTGCCGAGTGTGTAGTTGTCACTGCTGTTAGGGATGGGATGAATCTAACTCCGTATGAGTATGTTGTATGTAGACAAGGAATATCGTCCCAAAAATGTCTAAACTTCAGTGGACCAAAAAAGAGCATGCTTGTCATATCCGAATTTATTGGATGCTCTCCATCACTAAGTGGAGCATTTCGTGTCAATCCATGGAATTTCGAAAGGACAGCCGAGGCTTTGAATGAAGCAATCTCAATGGCTGATACGGAGAAGCAGTTGCGACACGAGAAGCATTACCGTTATGTTGCTACCCATGAAGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGTGCTGAACATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTATATCAGCTTACAGTAGGGCCGAAAGTCGGGCCATTCTTTTGGACTATGATGGTACTGTGATGCCACAAAATTCCATAAACAAGTCGCCAAGTCAGCAGGTTATCTCTATCCTTAATACGCTTTGTGCAGATACAAAAAATGTAGTCTTCATTGTGAGTGGACGAGGGAGAGACAGCCTTAGCAAGTGGTTTCTTCCGTGCAAGAAGCTTGGAATTGCAGCAGAACATGGATACTTTTTTAGGCAGTCACAGAATAAGGAGTGGGAGATCTGCGGCCAAAGTTCGGATTTTGGATGGATGCAGATGGTCGAACCTGTTATGAAATTATATACCGAGGCTACAGATGGTTCTTCTATAGAAAGAAAGGAAAGTGCCTTGGTTTGGAAGTATCGAGATGCAGATCCTGGTTTCGGATCTTCCCAGGCAAAGGAGATGTTGGAACATCTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGCCAAGAGCGGCCAATTTATAGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCTTAGTGGCTGAAAAGGTCTTTTCATCAATGGCAGATGATGGAAAACTTGCCGACTTTGTGTTGTGTATTGGCGACGACAGATCTGATGAGGACATGTTTGAAATCATTGGTAATGCATTGTCCAGTAATATTCTTTCTCCAACGACATCAGTTTTTGCCTGCACTGTTGGGCAAAAGCCAAGCAAAGCCAAATATTATTTAGATGATACAGCTGAAGTGATAAGCATGTTAGAATCCCTGGCCGAAGCTTCTAGTCCATTGCCATCCTCCGACGATGAAGACGGTAAAACGCTTCTCGAAAGTTGA 2895 41.45 MTQLVRISGRAPFGVKPYNYEFKYFRAQFSGHNSITSIYLQGYIKHTCFKKNKKINNNKWLLNGVYANKYEFGSLLLLLLLGFMGYVSKFIGLDLFLPFIWLIKGRNMISRSYTNLLDLASGNFPAMDVKTKRFPRVMTVPGNVDELDDDQACSVTSENPSSISSDRMIIVANQLPVRAIRMEDDKSWSFSWNEDSLLLQLKDGLPEDMKVLYVGSLKADIQPDEQDEVSQVLLEKFRCIPTFLPPHILEKFYDGFCKSHLWPLFHYRLPYSADQNGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYFGRTIGIKIMPVGIHMRRIESVMKLADEDAKTKELKQQFAGKSVLLGVDDMDIFKGINLKLLAMEQVLQQHPKWQGKAVLIQIINPARSKGRDLQEIEDEIKETARRINQEYGHPGYDPIVLLNRHVPITERVVYYSIAECVVVTAVRDGMNLTPYEYVVCRQGISSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNFERTAEALNEAISMADTEKQLRHEKHYRYVATHEVAYWSRSFLQDMERTCAEHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIISAYSRAESRAILLDYDGTVMPQNSINKSPSQQVISILNTLCADTKNVVFIVSGRGRDSLSKWFLPCKKLGIAAEHGYFFRQSQNKEWEICGQSSDFGWMQMVEPVMKLYTEATDGSSIERKESALVWKYRDADPGFGSSQAKEMLEHLESVLANEPVAAKSGQFIVEVKPQGVTKGLVAEKVFSSMADDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLESLAEASSPLPSSDDEDGKTLLES 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43804087 43811794 - Sed0010912.1 Sed04g3380 711983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3380 964 Gene3D - 695 801 IPR023214 -
Sed04g3380 964 Gene3D - 824 956 IPR023214 -
Sed04g3380 964 Gene3D Glycogen Phosphorylase B; 160 420 - -
Sed04g3380 964 FunFam Trehalose-6-phosphate synthase 2 779 858 - -
Sed04g3380 964 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 695 812 - -
Sed04g3380 964 CDD HAD_TPP 697 936 - -
Sed04g3380 964 Gene3D Glycogen Phosphorylase B; 421 633 - -
Sed04g3380 964 MobiDBLite consensus disorder prediction 945 964 - -
Sed04g3380 964 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 160 419 - -
Sed04g3380 964 NCBIfam trehalose-phosphatase 694 944 IPR003337 GO:0005992(InterPro)
Sed04g3380 964 Pfam Trehalose-phosphatase 699 933 IPR003337 GO:0005992(InterPro)
Sed04g3380 964 FunFam Alpha,alpha-trehalose-phosphate synthase 421 633 - -
Sed04g3380 964 NCBIfam HAD-IIB family hydrolase 698 902 IPR006379 -
Sed04g3380 964 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 825 956 - -
Sed04g3380 964 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 167 652 - -
Sed04g3380 964 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 131 946 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed04g3380 964 Pfam Glycosyltransferase family 20 167 649 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g3380 964 Coils Coil 486 506 - -
Sed04g3380 964 CDD GT20_TPS 167 649 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g3380 964 SUPERFAMILY HAD-like 696 944 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3380 Sed-Chr4:43804087 Sed14g1527 Sed-Chr14:23539662 0.00E+00 dispersed
Sed10g0215 Sed-Chr10:1234822 Sed04g3380 Sed-Chr4:43804087 0.00E+00 wgd
Sed04g3380 Sed-Chr4:43804087 Sed05g3181 Sed-Chr5:41669794 6.80E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3380 K16055 - csv:101209914 1604.34